Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_F14
         (651 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.          46   8e-07
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    31   0.042

>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
          Length = 1132

 Score = 46.4 bits (105), Expect = 8e-07
 Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 2/113 (1%)
 Frame = +3

Query: 84   DENGMTALQHAAYKGNKDMVQLLLDRGADVNSGKHEYNYTALHFGALSGSSEVCKLLLDA 263
            +++G+TALQ A Y  N  + ++LL+ GA V     ++    LH    + + ++   +L+ 
Sbjct: 848  NDDGLTALQAAVYARNLKITRILLEAGASVREKDLKHGNNILHIAVDNDALDIVHYILEE 907

Query: 264  GAKPTA--TNSVGRTSAQMAAFVGNHHTVATINNYIPRSEIEYYSIPQGLQQE 416
              +      N+ G T  Q+A      HT    N  I R  + +Y  P GLQ+E
Sbjct: 908  VKEELGRERNNAGYTPLQLAD--AKSHTGQGNNKLIVRELLRHY--PDGLQKE 956



 Score = 33.9 bits (74), Expect = 0.004
 Identities = 20/66 (30%), Positives = 35/66 (53%)
 Frame = +3

Query: 72   VNFFDENGMTALQHAAYKGNKDMVQLLLDRGADVNSGKHEYNYTALHFGALSGSSEVCKL 251
            +++ D  G T L  A  +   DMV+LLL +G       ++   TAL     + + ++ ++
Sbjct: 810  LHYCDYRGNTPLHRAVVENVPDMVRLLLLQGGLRLDCTNDDGLTALQAAVYARNLKITRI 869

Query: 252  LLDAGA 269
            LL+AGA
Sbjct: 870  LLEAGA 875



 Score = 25.8 bits (54), Expect = 1.2
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 186 HEYNYTALHFGALSGSSEVCKLLLDAGAK 272
           ++ N T LH      S  + K LL AGAK
Sbjct: 781 NDRNETGLHLAVSCNSEPIVKALLGAGAK 809


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 30.7 bits (66), Expect = 0.042
 Identities = 22/62 (35%), Positives = 30/62 (48%)
 Frame = -1

Query: 225 TEHQSVTLCSYTRAFQNSRPLPYRAVIAPYPCSLYRPRVVKQSYHFRQRNLRRLCVESKY 46
           TEHQSV +   T   +N  P     VI   PC+ + P+   +SY  +Q+  R L V    
Sbjct: 652 TEHQSVAI-QLTSEIENV-PQNLSKVIVAEPCAEFFPQPKYRSYGLQQKPPRYLQVSMDE 709

Query: 45  LK 40
           LK
Sbjct: 710 LK 711


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 673,372
Number of Sequences: 2352
Number of extensions: 14583
Number of successful extensions: 23
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64395870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)