Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_F12
         (513 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             30   0.97 
SB_11223| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.6e-30)       29   3.0  
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_33412| Best HMM Match : ANF_receptor (HMM E-Value=0)                28   3.9  
SB_29638| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_55023| Best HMM Match : UDPG_MGDP_dh (HMM E-Value=0)                27   6.9  
SB_44830| Best HMM Match : I-set (HMM E-Value=1.1e-08)                 27   9.1  
SB_41184| Best HMM Match : Sperm_Ag_HE2 (HMM E-Value=10)               27   9.1  
SB_5524| Best HMM Match : Glyco_hydro_31 (HMM E-Value=1.7e-10)         27   9.1  

>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 6725

 Score = 30.3 bits (65), Expect = 0.97
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +1

Query: 145  AGDAGCLKQTKRNAGHGVWT--YRVPPPMPSKKSIRLAQGLGG-LCW 276
            AG + CLK+ +R  G+GV    YR  P      S    Q LGG  CW
Sbjct: 2312 AGLSPCLKERRRAIGYGVGVIKYRFIPDCKQDGSYEEVQCLGGKQCW 2358


>SB_11223| Best HMM Match : Thyroglobulin_1 (HMM E-Value=1.6e-30)
          Length = 147

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = +1

Query: 148 GDAGCLKQTKRNAGHGVWT--YRVPPPMPSKKSIRLAQGLGG-LCW 276
           G + CLK+ +R  G+GV    YR  P      S    Q LGG  CW
Sbjct: 2   GLSPCLKERRRAIGYGVGVIKYRFIPDCKQDGSYEEVQCLGGKQCW 47


>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1480

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
 Frame = +3

Query: 150 RRWLLETNQTKC-RTWSLDVPCTATNAFQKIDSVSSRAW 263
           R W+    + KC + W +    T  N  Q I SVS   W
Sbjct: 434 RNWIATGGRDKCVKVWDVQGKATPVNNIQTISSVSRIKW 472


>SB_33412| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 852

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 352 MYWDQYKATHQLYAQVQLQCDTESTTSTI 266
           +Y   Y  TH ++AQV L C    T +TI
Sbjct: 766 IYLPSYLNTHDVWAQVYLNCGVSVTIATI 794


>SB_29638| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -3

Query: 283 STTSTIHQALELTESIFWKALVAVHGTSKLHVLHFVWFVSSSQRRQRFAAYGAE 122
           S+  T+H A   +ES    A +A   T+K H     W   S++ R+R    GA+
Sbjct: 43  SSHRTVHDAPRASES----ATIANESTTKTHAESSGWTKRSARTRERLQPIGAD 92


>SB_55023| Best HMM Match : UDPG_MGDP_dh (HMM E-Value=0)
          Length = 354

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 147 WRRWLLETNQTKCRTWSLDVPCTATNAF--QKIDSVSS 254
           ++ W+      K  TWS ++   A NAF  Q+I S++S
Sbjct: 175 YQHWIPRDKIIKTNTWSSELSKLAANAFLAQRISSINS 212


>SB_44830| Best HMM Match : I-set (HMM E-Value=1.1e-08)
          Length = 480

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 18  LGADFGKVF-YLYKIYRGSQQITRNNVDKN 104
           LG D+   F +  K  R SQ ITRN+VDK+
Sbjct: 377 LGRDYRSAFLWRRKPKRPSQAITRNSVDKS 406


>SB_41184| Best HMM Match : Sperm_Ag_HE2 (HMM E-Value=10)
          Length = 252

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -1

Query: 345 GINIR--PLTSYMLRFSCNVIQNPPPAQSTK 259
           GIN+   P TSY +RFS  ++++  P  ST+
Sbjct: 222 GINVPKVPCTSYTVRFSLPLLRHSTPRASTR 252


>SB_5524| Best HMM Match : Glyco_hydro_31 (HMM E-Value=1.7e-10)
          Length = 718

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 18  LGADFGKVFYLYKIYRGSQQITRNNVDKNFANESYSAP 131
           LG+   + FYLY++Y G    TR    K+F N S   P
Sbjct: 8   LGSRSVRSFYLYEVYTG----TRTGAFKSFKNVSTGLP 41


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,109,025
Number of Sequences: 59808
Number of extensions: 333683
Number of successful extensions: 803
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)