Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_F11
         (627 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58680| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.13)               29   4.1  
SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)                      29   4.1  
SB_2694| Best HMM Match : LIM (HMM E-Value=6.6e-14)                    28   7.1  
SB_50810| Best HMM Match : DUF1452 (HMM E-Value=4.9)                   27   9.4  

>SB_58680| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.13)
          Length = 660

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
 Frame = +3

Query: 138 IVVSKSSAEENCE--TVGS---EVHVTKEEYDEMGRLLRSCSGEVSVNKCEGMCNSQV 296
           I  +K +A+ N +  TV +   EVHV K++Y+ +GR ++   G   V++ + M  + +
Sbjct: 8   ISAAKKAAKRNAQQKTVTNNPFEVHVNKQKYEILGRKMKHDRGLPGVSRSKAMKKANI 65


>SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 3312

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
 Frame = +3

Query: 252 EVSVNKCEGMCNSQVHP-SISSATGF-----QKECFCCREKFLRERLVTLTHCY 395
           +  ++KCE  CN+     S S + GF     +K C  C++  +  ++ T+  C+
Sbjct: 584 DTGLHKCEHQCNNTFGSYSCSCSPGFALADDKKSCKACKDNLVMSKINTMPLCF 637


>SB_2694| Best HMM Match : LIM (HMM E-Value=6.6e-14)
          Length = 446

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 267 KCEGMCNSQVHPSISSATGFQKECFCCREKFLRERLVTLTHCYDPDGI 410
           +C+ MC      S++    + K CF C E   R++L + T+C + +GI
Sbjct: 299 RCDKMCYHAEGISMAGKR-WHKSCFACAEVRCRKKLES-TNCCEGNGI 344


>SB_50810| Best HMM Match : DUF1452 (HMM E-Value=4.9)
          Length = 214

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -3

Query: 271 HLFTLTSPLHDLSNLPISSYSS 206
           H  T TSPL   S LP+SS SS
Sbjct: 20  HTSTTTSPLSSSSTLPLSSISS 41


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,194,163
Number of Sequences: 59808
Number of extensions: 302890
Number of successful extensions: 793
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)