Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_F09
(729 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 36 0.008
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 32 0.073
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 29 0.90
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 29 0.90
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 28 1.6
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom... 28 1.6
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 28 1.6
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 2.1
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy... 27 2.7
SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr ... 27 2.7
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 27 3.6
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 27 3.6
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 27 3.6
SPBC15D4.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 26 6.3
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac... 26 6.3
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 26 6.3
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 26 6.3
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac... 25 8.4
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 35.5 bits (78), Expect = 0.008
Identities = 21/62 (33%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Frame = +3
Query: 282 ESKRIFEKHKQLAQEYLKIQTELAYLSNHKTELE-EKMDDDELRQKREMIQLENEKESLI 458
ES+RIF + ++L QE + EL L + E E +++ D+E R+K+E+++ E +++ I
Sbjct: 97 ESQRIFSEKQRLEQE--RFNREL--LEKKRIEAERQRLKDEEERRKKELMEKEKKEKERI 152
Query: 459 KL 464
+L
Sbjct: 153 RL 154
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 32.3 bits (70), Expect = 0.073
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +3
Query: 279 EESKRIFEKHKQLAQEYLKIQTELAYLSNHKTELEEKMDDDEL--RQKREMIQLENEKES 452
++ + I K+K+L ++YL I + + S H + LE+ +++ L R+ E + +++
Sbjct: 958 KDEQTISSKYKELEKDYLNIMADYQHSSQHLSNLEKAINEKNLNIRELNEKLMRLDDELL 1017
Query: 453 LIKLYCSLNKQLARAENDS 509
L + Q R EN S
Sbjct: 1018 LKQRSYDTKVQELREENAS 1036
Score = 29.9 bits (64), Expect = 0.39
Identities = 17/80 (21%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Frame = +3
Query: 270 LSNEESKRIFEKHKQLAQEYLKIQTELAYLSNHKTELEEKMDD---DELRQKREMIQLEN 440
+++E+ + ++ + + + ++ QTE++YLS+ + LE+K+ DE + +LE
Sbjct: 913 IADEKYEFLYAEKQSIEEDLANKQTEISYLSDLSSTLEKKLSSIKKDEQTISSKYKELEK 972
Query: 441 EKESLIKLYCSLNKQLARAE 500
+ +++ Y ++ L+ E
Sbjct: 973 DYLNIMADYQHSSQHLSNLE 992
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 28.7 bits (61), Expect = 0.90
Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Frame = +3
Query: 258 ISPDLSNEESKRIFEKHKQLAQEYLKIQTEL-AYLSNHKTELEEKM--------DDDELR 410
++ +L + + R E K+ L I +EL + +S + EL E + + D+L
Sbjct: 303 VALELQSSQLSRQIEFSKKDESSKLNILSELESKISEKENELSEILPKYNAIVSEADDLN 362
Query: 411 QKREMIQLENEKESLIKLYCSLNKQLARAENDSWLHSE 524
KR M+ L+N+K+SL+ ++ + E D W+ ++
Sbjct: 363 -KRIML-LKNQKQSLLDKQSRTSQFTTKKERDEWIRNQ 398
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 28.7 bits (61), Expect = 0.90
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +3
Query: 279 EESKRIFEKHKQLAQEYLKIQTELAYLSNHKTELEEKMDDDELRQKREMIQLENEKE 449
E+S + +KH+ L Q +Q LS ++ELE + L Q+ E+++ E EK+
Sbjct: 296 EQSDLLHKKHQMLIQLENDLQFREQRLSARESELENVI-ASRLAQREEILRRELEKQ 351
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.9 bits (59), Expect = 1.6
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 282 ESKRIFEKHKQLAQEYLKIQTELAYLSNHKTELEEKMDDDEL-RQKREMIQLENEKESLI 458
E++R+ E+ Q A E + + + + E++ EL RQKRE Q + E+E +
Sbjct: 616 EAERLAEQAAQKALEAKRQEEARKKREEQRLKREQEKKQQELERQKREEKQKQKEREKKL 675
Query: 459 K 461
K
Sbjct: 676 K 676
>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 27.9 bits (59), Expect = 1.6
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +3
Query: 300 EKHKQLAQEYLKIQTELAYLSNHKTELEEK---MDDDELRQKREMIQLENEKESLIKLYC 470
++ K Q+ K Q EL + +LEEK + DD + ++ + LE E L+K
Sbjct: 72 KQQKDKLQQENKDQ-ELKNIEESYKKLEEKTEHLSDDNVSLEKRVEYLETENTKLVKTLN 130
Query: 471 SLNKQ 485
SLN +
Sbjct: 131 SLNSE 135
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 27.9 bits (59), Expect = 1.6
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +3
Query: 267 DLSNEESKRIFEKHKQLAQEYL-KIQTELAYLSNHKTELEEKMDDDELRQKREMIQLENE 443
D+ ++ ++F + + + L K+Q E LS TE+EE + E+ + E+ QL+N
Sbjct: 237 DVEQSQNVKVFTERIRFLENALEKVQREKDSLS---TEMEEDKSNKEVDYEYEIRQLQNR 293
Query: 444 KESL 455
+ L
Sbjct: 294 LDEL 297
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.5 bits (58), Expect = 2.1
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = +3
Query: 309 KQLAQEYLKIQTELAYLSNHKTELEEKMDDDELRQKREMIQLENEKESLIKLYCSLNKQL 488
++L E K+ E L + ++L+ ++ +L ++ E+EKESL L +
Sbjct: 769 ERLISENDKLLAERERLMSLVSDLQTFLNQQQLSDAARKVKFESEKESLSLSLQKLKESN 828
Query: 489 ARAENDSWLHS 521
+ ND LHS
Sbjct: 829 EKMSND--LHS 837
>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 559
Score = 27.1 bits (57), Expect = 2.7
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = +3
Query: 312 QLAQEYLKIQTELAYLSNHKTELEEKMDDDELRQKREMIQLENEKESLIKLYCSLNKQL 488
Q + EY T+L Y+S TEL E+ E +K + LE K+S +L+C ++ ++
Sbjct: 470 QQSSEYAN--TQLQYIS--LTELSERFGKLEHAEKMAISALELAKKSKDELWCLISGRI 524
>SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 392
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 228 HMMLDPHLRPISPDLSNEESKRIFEKHKQLAQE 326
H MLDP ++ ES ++ KH QL +E
Sbjct: 14 HFMLDPDYVNVNNGSCGTESLAVYNKHVQLLKE 46
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 26.6 bits (56), Expect = 3.6
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +3
Query: 345 ELAYLSNHKTELEEK--MDDDELRQKREMIQLENEKESLIKLYCSLNKQ 485
E YLS+ ++ + K DELR++RE Q+E K+ K SLNK+
Sbjct: 2 ESRYLSDRRSRFKSKGVFKADELRRQREEQQIEIRKQ---KREESLNKR 47
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 26.6 bits (56), Expect = 3.6
Identities = 23/80 (28%), Positives = 39/80 (48%)
Frame = +3
Query: 267 DLSNEESKRIFEKHKQLAQEYLKIQTELAYLSNHKTELEEKMDDDELRQKREMIQLENEK 446
D S EE + +HK L + ++ + +A N + E E M L++K + E+
Sbjct: 891 DSSLEEMRN---RHKSLNEHFIMLSDSMA---NLQVE-HENMSALLLKEKMYLKNQTVEQ 943
Query: 447 ESLIKLYCSLNKQLARAEND 506
SL SLN QLA+ +++
Sbjct: 944 ASLKSEIASLNSQLAKQKSE 963
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 534 GASLLNEANCRFPLALTACLDCSTVLLR 451
G SL+NE C+ P LT C T L +
Sbjct: 82 GESLVNENPCKLPFYLTVPHICETTLTK 109
>SPBC15D4.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 138
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/65 (20%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +3
Query: 264 PDLSNEESKRIFEKHK-QLAQEYLKIQTELAYLSNHKTELEEKMDDDELRQKREMIQLEN 440
P+ + + +H+ ++ EY + E +YL++ + +++ DEL+ ++ +L N
Sbjct: 2 PESAPSTPPSVNRRHEPEMLSEYPSLMFEHSYLASPSSPIDQV--HDELKHSQKRPRLTN 59
Query: 441 EKESL 455
++E++
Sbjct: 60 DEETI 64
>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 25.8 bits (54), Expect = 6.3
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +3
Query: 369 KTELEEKMDDDELRQKRE---MIQLENEKESLIKLYCSLNKQLARAENDSWLHSE 524
K +L+EK +++ RQK + ++Q+ +KE L +L LAR E+D + E
Sbjct: 175 KRKLKEK-EEEARRQKEQQQGVVQVRQQKEYLKELERQKTVPLARYEDDPEYNKE 228
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.8 bits (54), Expect = 6.3
Identities = 22/99 (22%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Frame = +3
Query: 246 HLRPISPDLSN-EESKRIFEKHKQLAQEYLKIQTELAYLSNHKTELEEKMDDDELRQKRE 422
HL ++ N E+K IF++ + L + + +TEL+ L L+ + D+ +
Sbjct: 710 HLETLTKTFKNLSEAKPIFDEIELLDKRLSETKTELSDLQGDLQGLDIRKDEIQSELDTL 769
Query: 423 MIQLEN-EK-ESLIKLYCSLNKQLARAENDSWLHSEEMP 533
++ N EK + L+K +L +++ + ++ + E+P
Sbjct: 770 YLRRANLEKLQLLVKDISNLEEEIRTIDRETEVLRIELP 808
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 351 AYLSNHKTELEEKMDDDELRQKRE 422
A+ N ++E + +DDDE++QK E
Sbjct: 923 AHDKNSRSEETDLIDDDEIKQKEE 946
>SPCC777.14 |prp4||serine/threonine protein kinase
Prp4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 477
Score = 25.4 bits (53), Expect = 8.4
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = +2
Query: 419 RNDTIRKRKGILNKTVLQSKQAVSASGKRQLASFRR 526
RN+ + ++G+ ++L+ QA GK+ + + R
Sbjct: 191 RNNEVMYKEGLKEVSILERLQAADREGKQHIIHYER 226
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,444,060
Number of Sequences: 5004
Number of extensions: 42125
Number of successful extensions: 183
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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