Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_F07
(656 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 208 4e-55
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 59 5e-10
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 50 4e-07
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 48 1e-06
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 42 6e-05
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 31 0.19
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 27 3.1
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 26 5.5
SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po... 25 7.3
SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5 |Schi... 25 9.6
SPAC5H10.08c |pan6||pantoate-beta-alanine ligase |Schizosaccharo... 25 9.6
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 25 9.6
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 208 bits (509), Expect = 4e-55
Identities = 100/162 (61%), Positives = 118/162 (72%), Gaps = 2/162 (1%)
Frame = +3
Query: 177 LDEGDIALLKSYGQGQYTKIIKEVEEGIQTVMKRVNELTGIKESDTGXXXXXXXXXXXXK 356
LDEGDI LLKSY G Y + + ++E + V+KR+N+ GIKESDTG +
Sbjct: 27 LDEGDIELLKSYATGPYARELAAIKEDTEAVLKRINDTVGIKESDTGLAPISFWDVAADR 86
Query: 357 QTLQNEQPLQVARCTKIINADSNDPK--YIINVKQFAKFVVDLQDSVAPTDIEEGMRVGV 530
Q + EQPLQVARCTKII + + K Y+IN+KQ AKFVV L + V+PTDIEEGMRVG
Sbjct: 87 QRMSEEQPLQVARCTKIIENEQSAEKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGC 146
Query: 531 DRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEXI 656
DRNKY I +PLPPKIDP+VTMMQVEEKPDVTY DVGGCKE I
Sbjct: 147 DRNKYAIQLPLPPKIDPSVTMMQVEEKPDVTYGDVGGCKEQI 188
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 59.3 bits (137), Expect = 5e-10
Identities = 28/75 (37%), Positives = 45/75 (60%)
Frame = +3
Query: 432 KYIINVKQFAKFVVDLQDSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 611
K ++ V K+VVD+ + +I+ +RV + + YQ+ LP K+DP V++M VE+
Sbjct: 80 KVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKI 139
Query: 612 PDVTYSDVGGCKEXI 656
PD TY VGG ++ I
Sbjct: 140 PDSTYEMVGGLEKQI 154
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 49.6 bits (113), Expect = 4e-07
Identities = 22/75 (29%), Positives = 43/75 (57%)
Frame = +3
Query: 432 KYIINVKQFAKFVVDLQDSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 611
++I+ ++VV +++V + + +G+RV +D I LP ++DP V M +E+
Sbjct: 67 RFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSIEDP 126
Query: 612 PDVTYSDVGGCKEXI 656
D++++ VGG E I
Sbjct: 127 GDISFAGVGGLNEQI 141
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 48.0 bits (109), Expect = 1e-06
Identities = 22/56 (39%), Positives = 33/56 (58%)
Frame = +3
Query: 489 VAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEXI 656
V P ++ G +GV+++ Y I LP + D V M+V+EKP YSD+GG + I
Sbjct: 139 VEPEELHPGDLIGVNKDSYLIIDKLPSEYDSRVKAMEVDEKPTERYSDIGGLSKQI 194
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 42.3 bits (95), Expect = 6e-05
Identities = 18/61 (29%), Positives = 38/61 (62%)
Frame = +3
Query: 459 AKFVVDLQDSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVG 638
+ +VV + ++ ++ V + R+ + LPP+ D +++M++ +E+PDV+Y+DVG
Sbjct: 78 SNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDVSYADVG 137
Query: 639 G 641
G
Sbjct: 138 G 138
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 30.7 bits (66), Expect = 0.19
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = +3
Query: 462 KFVVDLQDSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGG 641
++ V + V +E G V + I L DP + +M++++ P +Y+D+GG
Sbjct: 136 EYYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTESYADIGG 195
Query: 642 CKEXI 656
+ I
Sbjct: 196 LESQI 200
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/61 (22%), Positives = 30/61 (49%)
Frame = +3
Query: 468 VVDLQDSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCK 647
++DL + ++ + + V +D ++ + P + TV E P+V + D+GG +
Sbjct: 449 MIDLDEDEIDAEVLDSLGVTMDNFRFALGSSNPSALRETVV-----EVPNVRWEDIGGLE 503
Query: 648 E 650
E
Sbjct: 504 E 504
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 583 VGSIFGGSGMWIWYLLRSTPTLMPSSI 503
VGSI+ S ++ WYL R P++ S+
Sbjct: 1967 VGSIYTVSSVFWWYLYRMLPSVASLSL 1993
>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 25.4 bits (53), Expect = 7.3
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -1
Query: 614 RFLLNLHHGDSWIYFRRERYVDLVFIT 534
R+++N+ + YFR Y+ L F+T
Sbjct: 74 RYIVNVEFSNVQSYFRYYNYISLYFVT 100
>SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 173
Score = 25.0 bits (52), Expect = 9.6
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Frame = -2
Query: 631 SLYVTSGFSSTCIMVTVGS------IFGGSGMWIWYLLRSTPTLMPSSISVGATES 482
++Y + S+T +M+ V S +FG G WI + L ++ T S G ES
Sbjct: 117 AMYSSFYLSATILMLIVMSFNGYAILFGFVGAWIGFFLFASDTYGTPSTGTGCCES 172
>SPAC5H10.08c |pan6||pantoate-beta-alanine ligase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 283
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/39 (25%), Positives = 20/39 (51%)
Frame = -1
Query: 626 VCYIRFLLNLHHGDSWIYFRRERYVDLVFITIHTNPHAF 510
+ ++ + NLH G + +R+ + V ++I NP F
Sbjct: 24 IAFVPTMGNLHEGHFSLVREAKRHAEKVVVSIFVNPMQF 62
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -1
Query: 305 LFNACQFVNPLHYCLNSFFYFLDDFCVLSLAV*LQKRNI 189
L+ +C F + Y LNS FY L + + ++ + + ++ +
Sbjct: 265 LWLSCHFYYSIIYLLNSMFYLLTFYSLRAITMLIYEQTL 303
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,440,669
Number of Sequences: 5004
Number of extensions: 46138
Number of successful extensions: 165
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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