Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_F07
(656 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical pr... 260 8e-70
Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical pr... 62 4e-10
AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical ... 58 4e-09
AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical ... 58 4e-09
AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome re... 54 1e-07
AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome re... 54 1e-07
AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome re... 52 3e-07
AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome re... 41 7e-04
U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome regu... 40 0.001
U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical pr... 31 0.95
Z93386-1|CAB07645.1| 442|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical p... 29 3.8
Z19155-3|CAA79558.2| 812|Caenorhabditis elegans Hypothetical pr... 29 3.8
U97008-6|AAB52307.1| 323|Caenorhabditis elegans Serpentine rece... 29 3.8
AF022985-8|AAB69966.1| 354|Caenorhabditis elegans Hypothetical ... 28 6.7
Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical p... 27 8.9
Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical p... 27 8.9
Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical p... 27 8.9
Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical pr... 27 8.9
DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48 expres... 27 8.9
>Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical
protein C52E4.4 protein.
Length = 435
Score = 260 bits (636), Expect = 8e-70
Identities = 124/186 (66%), Positives = 143/186 (76%), Gaps = 1/186 (0%)
Frame = +3
Query: 102 MPDHLGNDMRXXXXXXXXXXXXXX-SLDEGDIALLKSYGQGQYTKIIKEVEEGIQTVMKR 278
MPDHLG+DMR +LDEGDIA+LK YGQG Y + +K ++ I+ +K+
Sbjct: 1 MPDHLGDDMRKTKKDDTKEEEKNFQALDEGDIAVLKRYGQGPYAEQLKTLDADIENCLKK 60
Query: 279 VNELTGIKESDTGXXXXXXXXXXXXKQTLQNEQPLQVARCTKIINADSNDPKYIINVKQF 458
VNEL+G+KESDTG KQ +Q EQPLQVARCTKII +D +DP+Y+INVKQF
Sbjct: 61 VNELSGVKESDTGLAPPALWDIAADKQAMQQEQPLQVARCTKIITSDKHDPRYLINVKQF 120
Query: 459 AKFVVDLQDSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVG 638
AKFVVDL DSVAPTDIEEGMRVGVDRNKYQIH+PLP KIDPTVTMMQVEEKPDVTYSDVG
Sbjct: 121 AKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHLPLPAKIDPTVTMMQVEEKPDVTYSDVG 180
Query: 639 GCKEXI 656
GCK+ I
Sbjct: 181 GCKDQI 186
>Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical
protein Y49E10.1 protein.
Length = 416
Score = 61.7 bits (143), Expect = 4e-10
Identities = 29/75 (38%), Positives = 43/75 (57%)
Frame = +3
Query: 432 KYIINVKQFAKFVVDLQDSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 611
K ++ V K+VVD+ S+ + G RV + + Y +H LP K+DP V++M VE+
Sbjct: 94 KVLVKVHPEGKYVVDVDKSIDINSLNTGARVALRADSYALHKLLPNKVDPLVSLMMVEKV 153
Query: 612 PDVTYSDVGGCKEXI 656
PD TY VGG + I
Sbjct: 154 PDSTYEMVGGLDKQI 168
>AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical
protein F56F11.4a protein.
Length = 411
Score = 58.4 bits (135), Expect = 4e-09
Identities = 28/70 (40%), Positives = 41/70 (58%)
Frame = +3
Query: 432 KYIINVKQFAKFVVDLQDSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 611
K ++ K++VD+ SV + + G RV + + Y IH LP K+DP V++M VE+
Sbjct: 89 KVLVKNHPDGKYIVDVAASVDISTLAAGTRVALRADNYAIHEVLPSKVDPLVSLMMVEKV 148
Query: 612 PDVTYSDVGG 641
PD TY VGG
Sbjct: 149 PDSTYEMVGG 158
>AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical
protein F56F11.4b protein.
Length = 432
Score = 58.4 bits (135), Expect = 4e-09
Identities = 28/70 (40%), Positives = 41/70 (58%)
Frame = +3
Query: 432 KYIINVKQFAKFVVDLQDSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 611
K ++ K++VD+ SV + + G RV + + Y IH LP K+DP V++M VE+
Sbjct: 110 KVLVKNHPDGKYIVDVAASVDISTLAAGTRVALRADNYAIHEVLPSKVDPLVSLMMVEKV 169
Query: 612 PDVTYSDVGG 641
PD TY VGG
Sbjct: 170 PDSTYEMVGG 179
>AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform b
protein.
Length = 398
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/78 (32%), Positives = 44/78 (56%)
Frame = +3
Query: 423 NDPKYIINVKQFAKFVVDLQDSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQV 602
++ K+I+ ++VV + S+ ++++G RV +D I LP ++DP V M
Sbjct: 74 SEEKFIVKATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSH 133
Query: 603 EEKPDVTYSDVGGCKEXI 656
E+ +++YSDVGG E I
Sbjct: 134 EDPGNISYSDVGGLAEQI 151
>AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform a
protein.
Length = 406
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/78 (32%), Positives = 44/78 (56%)
Frame = +3
Query: 423 NDPKYIINVKQFAKFVVDLQDSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQV 602
++ K+I+ ++VV + S+ ++++G RV +D I LP ++DP V M
Sbjct: 82 SEEKFIVKATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSH 141
Query: 603 EEKPDVTYSDVGGCKEXI 656
E+ +++YSDVGG E I
Sbjct: 142 EDPGNISYSDVGGLAEQI 159
>AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 5 protein.
Length = 430
Score = 52.4 bits (120), Expect = 3e-07
Identities = 25/73 (34%), Positives = 41/73 (56%)
Frame = +3
Query: 438 IINVKQFAKFVVDLQDSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPD 617
+I A + + + V P +++ G VGV+++ Y I LP + D V M+V+E+P
Sbjct: 114 VIKTSTRATYFLPVVGLVDPDELKPGDLVGVNKDSYLILEKLPAEYDSRVKAMEVDERPT 173
Query: 618 VTYSDVGGCKEXI 656
YSD+GGC + I
Sbjct: 174 EQYSDIGGCDKQI 186
>AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 2 protein.
Length = 443
Score = 41.1 bits (92), Expect = 7e-04
Identities = 25/93 (26%), Positives = 46/93 (49%)
Frame = +3
Query: 378 PLQVARCTKIINADSNDPKYIINVKQFAKFVVDLQDSVAPTDIEEGMRVGVDRNKYQIHI 557
P+ V +II+ D I++ ++ V++ V +E G V ++ + +
Sbjct: 109 PMAVGSLEEIID----DQHAIVSTNVGSEHYVNIMSFVDKEQLEPGCSVLLNHKNHAVIG 164
Query: 558 PLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEXI 656
L DP V++M++E+ P TY+DVGG + I
Sbjct: 165 VLSDDTDPMVSVMKLEKAPQETYADVGGLDQQI 197
>U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 3 protein.
Length = 414
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/46 (32%), Positives = 29/46 (63%)
Frame = +3
Query: 504 IEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGG 641
++ G V + + + LPP+ D ++ M++ +EKPD++Y D+GG
Sbjct: 120 LKPGCSVALHKYSNALVDVLPPEADSSIQMLRPDEKPDISYGDIGG 165
>U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical
protein C10G11.8 protein.
Length = 438
Score = 30.7 bits (66), Expect = 0.95
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 561 LPPKIDPTVTMMQVEEKPDVTYSDVGGCKEXI 656
L KID +VE+ P T+ D+GGC+ I
Sbjct: 161 LDDKIDSNAMGHKVEKTPKETFDDIGGCESQI 192
>Z93386-1|CAB07645.1| 442|Caenorhabditis elegans Hypothetical
protein R11H6.2 protein.
Length = 442
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = -2
Query: 430 GSFESALMIFVHRATCRGCSFCSVCLSAARSHKAGGANPVSDSLMPVSSLTLFITV*IP 254
G+ +A A C G S CS+C SA K + +LM +S+ + + + +P
Sbjct: 2 GALLAAPFCAASAACCFGSSACSLCCSACPGAKNSTTTRIMYALMLISATFMAVVMLLP 60
>Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/58 (24%), Positives = 29/58 (50%)
Frame = +3
Query: 468 VVDLQDSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGG 641
++DL+D ++ + V ++ ++ + K P+ V E P+ T+SD+GG
Sbjct: 434 LIDLEDDTIDAEVLNSLAVTMENFRFAMG-----KSSPSALREAVVETPNTTWSDIGG 486
>Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/58 (24%), Positives = 29/58 (50%)
Frame = +3
Query: 468 VVDLQDSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGG 641
++DL+D ++ + V ++ ++ + K P+ V E P+ T+SD+GG
Sbjct: 434 LIDLEDDTIDAEVLNSLAVTMENFRFAMG-----KSSPSALREAVVETPNTTWSDIGG 486
>Z19155-3|CAA79558.2| 812|Caenorhabditis elegans Hypothetical
protein F54G8.2 protein.
Length = 812
Score = 28.7 bits (61), Expect = 3.8
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Frame = -2
Query: 592 MVTVGSIFGGSGMWIWYLLRSTPTLMPSSISVGATESCKSTTNFANCFTLIIYFGSFESA 413
++ + SI+GGS +W R + MP + E + T + +I ESA
Sbjct: 658 LLNIPSIYGGSN--LWGRSRKSKGRMPGLFPMKNAEKMQLQTRVQDIGDGLIELVGLESA 715
Query: 412 LMIFVHRATCRGCSFCSVCLSAA-RSHKA 329
+ + +A RG S C + ++HK+
Sbjct: 716 MQMGQIKAGVRGARRLSQCSTVVIQTHKS 744
>U97008-6|AAB52307.1| 323|Caenorhabditis elegans Serpentine
receptor, class h protein275 protein.
Length = 323
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -2
Query: 481 CKSTTNFANCFTLIIYFGSFESALMIFVHRATCRGC--SFCS 362
C+S N CF +I G F + +M+++H C FCS
Sbjct: 268 CQSANNL--CFIIIAAHGLFSTFIMLYIHSPYREACFRIFCS 307
>AF022985-8|AAB69966.1| 354|Caenorhabditis elegans Hypothetical
protein T15B7.13 protein.
Length = 354
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 281 NPLHYCLNSFFYFLDDFCVLSLAV*LQKRNI 189
NPLH FF LD FC +S V L ++ +
Sbjct: 68 NPLHIYFLVFFTVLDFFCNISFIVVLSQKEL 98
>Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 227 HKNHQGSRRRNSDSNEE 277
H+N GSRRR SDS+ +
Sbjct: 301 HRNRNGSRRRRSDSDSD 317
>Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 227 HKNHQGSRRRNSDSNEE 277
H+N GSRRR SDS+ +
Sbjct: 299 HRNRNGSRRRRSDSDSD 315
>Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical
protein F11A10.1a protein.
Length = 1291
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 227 HKNHQGSRRRNSDSNEE 277
H+N GSRRR SDS+ +
Sbjct: 301 HRNRNGSRRRRSDSDSD 317
>Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 227 HKNHQGSRRRNSDSNEE 277
H+N GSRRR SDS+ +
Sbjct: 301 HRNRNGSRRRRSDSDSD 317
>Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 227 HKNHQGSRRRNSDSNEE 277
H+N GSRRR SDS+ +
Sbjct: 299 HRNRNGSRRRRSDSDSD 315
>Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical
protein F11A10.1a protein.
Length = 1291
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 227 HKNHQGSRRRNSDSNEE 277
H+N GSRRR SDS+ +
Sbjct: 301 HRNRNGSRRRRSDSDSD 317
>DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48
expression abnormal protein protein.
Length = 1291
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 227 HKNHQGSRRRNSDSNEE 277
H+N GSRRR SDS+ +
Sbjct: 301 HRNRNGSRRRRSDSDSD 317
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,615,852
Number of Sequences: 27780
Number of extensions: 264465
Number of successful extensions: 886
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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