Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_F01
         (814 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9266| Best HMM Match : No HMM Matches (HMM E-Value=.)              107   8e-29
SB_15718| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.12 
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)                    30   2.6  
SB_31503| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  

>SB_9266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1490

 Score =  107 bits (258), Expect(2) = 8e-29
 Identities = 55/141 (39%), Positives = 82/141 (58%), Gaps = 6/141 (4%)
 Frame = +2

Query: 287  QNYRLSEEQKSFYWENGYLVIKELIDFTSLYSYKQRFLQICKGIVDS-PVMIVKEQALFE 463
            QN  L+E+   FY  NG+ V+++L+D   L  Y +RF QIC G V    + ++K+ ++  
Sbjct: 1077 QNDVLTEKDVEFYNHNGFFVVRKLVDKELLAKYHERFRQICVGKVKVLGLTVMKDVSMRN 1136

Query: 464  KNLKP-EEYINKLQEILYDDVFMTYGEHPRLLDVISQFIGDDITAIHSMFINKPPG---- 628
                P E  INK+Q+   D+V   Y   P +L  +  F+G ++ A+H+M INKPP     
Sbjct: 1137 SEFLPGERSINKIQDYQNDEVLFEYCSLPEILKYVECFVGPNVMAVHTMLINKPPDPGTK 1196

Query: 629  TARHPPHQDLFYFPIRPVDKI 691
            T+RHP HQDL YFP RP + +
Sbjct: 1197 TSRHPLHQDLHYFPFRPANSL 1217



 Score = 37.5 bits (83), Expect(2) = 8e-29
 Identities = 13/30 (43%), Positives = 22/30 (73%)
 Frame = +2

Query: 689  IIGSWTAVDHVNKDNGCLYVIPKSHKQXIL 778
            ++ +WTA++ V + NGCL V+P +HK  +L
Sbjct: 1255 MVCAWTAMEKVTRQNGCLVVLPGTHKTELL 1284


>SB_15718| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 19/49 (38%), Positives = 22/49 (44%)
 Frame = +2

Query: 659 FYFPIRPVDKIIGSWTAVDHVNKDNGCLYVIPKSHKQXILYPHGDVPEA 805
           F F + P   I  SW    H+N   GC Y  P S  Q +    GDVP A
Sbjct: 156 FGFVVLPTVVICTSWNQESHMNNITGCSYQKPVSTNQSLQL--GDVPNA 202


>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
          Length = 3368

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = +2

Query: 443  KEQALFEKNLKPEEYINKLQEILYDDVFMTYGEHPRLLDVISQFIGDDITAIHSMFINKP 622
            K+  +   ++  EE +  L E+ YD    T  ++ +L+DV+ QF   D+    S     P
Sbjct: 2783 KDDKVSNDDIDIEERLQPLSEVFYDGDQDTVKDYGQLIDVLGQFC--DVAESTSTANTTP 2840

Query: 623  PGTARHPP 646
              TA   P
Sbjct: 2841 QVTATDKP 2848


>SB_31503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 534

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +3

Query: 267 QCSQSCHRTTDCQRNKNHSIGRMG 338
           +C++  H+  DC+ +KNH +  +G
Sbjct: 200 RCNKQAHKAADCRCSKNHQLKNVG 223


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,511,992
Number of Sequences: 59808
Number of extensions: 513904
Number of successful extensions: 924
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)