Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_F01
(814 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82287-6|CAB05318.1| 312|Caenorhabditis elegans Hypothetical pr... 136 1e-32
Z80223-9|CAB02322.1| 312|Caenorhabditis elegans Hypothetical pr... 136 1e-32
Z82287-5|CAB05315.1| 328|Caenorhabditis elegans Hypothetical pr... 126 2e-29
AL110479-7|CAB54355.1| 288|Caenorhabditis elegans Hypothetical ... 50 2e-06
Z99281-46|CAB54455.3| 795|Caenorhabditis elegans Hypothetical p... 31 0.74
U40028-2|AAY55874.1| 1200|Caenorhabditis elegans Hypothetical pr... 29 5.2
L12018-5|AAU87822.1| 557|Caenorhabditis elegans Twik family of ... 28 6.9
Z66495-6|CAA91275.2| 547|Caenorhabditis elegans Hypothetical pr... 28 9.1
>Z82287-6|CAB05318.1| 312|Caenorhabditis elegans Hypothetical
protein ZK550.6 protein.
Length = 312
Score = 136 bits (330), Expect = 1e-32
Identities = 70/173 (40%), Positives = 108/173 (62%), Gaps = 10/173 (5%)
Frame = +2
Query: 299 LSEEQKSFYWENGYLVIKELIDFTSLYSYKQRFLQICKGIVDSP--VMIVKEQALFEKNL 472
LS EQ+ FY +NGYL+I+ + L ++QRF IC+ V +P + ++K+ ++ +
Sbjct: 16 LSAEQRRFYEKNGYLLIRNCVPQYELNRFRQRFQDICEKKVKAPENMTVMKDISIAKSEF 75
Query: 473 KP-EEYINKLQEILYDDVFMTYGEHPRLLDVISQFIGD---DITAIHSMFINKPPG---- 628
K E+ I K+Q+ D V Y ++P ++DV+ IG+ ++ A+H+M INKPP
Sbjct: 76 KDGEKAITKIQDFADDPVLFEYCKYPGVVDVVKDLIGNPKSNLMAMHTMLINKPPDNGKL 135
Query: 629 TARHPPHQDLFYFPIRPVDKIIGSWTAVDHVNKDNGCLYVIPKSHKQXILYPH 787
T+RHP HQDL YFP RP D I +WTA++ + + NGCL V+P +HK +L PH
Sbjct: 136 TSRHPMHQDLQYFPFRPADFICCAWTAMEKITRANGCLVVVPGTHK-GVLLPH 187
>Z80223-9|CAB02322.1| 312|Caenorhabditis elegans Hypothetical
protein ZK550.6 protein.
Length = 312
Score = 136 bits (330), Expect = 1e-32
Identities = 70/173 (40%), Positives = 108/173 (62%), Gaps = 10/173 (5%)
Frame = +2
Query: 299 LSEEQKSFYWENGYLVIKELIDFTSLYSYKQRFLQICKGIVDSP--VMIVKEQALFEKNL 472
LS EQ+ FY +NGYL+I+ + L ++QRF IC+ V +P + ++K+ ++ +
Sbjct: 16 LSAEQRRFYEKNGYLLIRNCVPQYELNRFRQRFQDICEKKVKAPENMTVMKDISIAKSEF 75
Query: 473 KP-EEYINKLQEILYDDVFMTYGEHPRLLDVISQFIGD---DITAIHSMFINKPPG---- 628
K E+ I K+Q+ D V Y ++P ++DV+ IG+ ++ A+H+M INKPP
Sbjct: 76 KDGEKAITKIQDFADDPVLFEYCKYPGVVDVVKDLIGNPKSNLMAMHTMLINKPPDNGKL 135
Query: 629 TARHPPHQDLFYFPIRPVDKIIGSWTAVDHVNKDNGCLYVIPKSHKQXILYPH 787
T+RHP HQDL YFP RP D I +WTA++ + + NGCL V+P +HK +L PH
Sbjct: 136 TSRHPMHQDLQYFPFRPADFICCAWTAMEKITRANGCLVVVPGTHK-GVLLPH 187
>Z82287-5|CAB05315.1| 328|Caenorhabditis elegans Hypothetical
protein ZK550.5 protein.
Length = 328
Score = 126 bits (304), Expect = 2e-29
Identities = 68/174 (39%), Positives = 102/174 (58%), Gaps = 10/174 (5%)
Frame = +2
Query: 299 LSEEQKSFYWENGYLVIKELIDFTSLYSYKQRFLQICKGIVDSPV-MIVKEQALFEKNLK 475
LS EQK FY +NG+L+++ + L Y+ +F IC+ V P M+V + K +
Sbjct: 32 LSVEQKQFYQKNGFLLVRGCVAKDELKKYENQFNAICERKVKPPPNMLVMKDVSIAKKVT 91
Query: 476 PE--EYINKLQEILYDDVFMTYGEHPRLLDVISQFIGDD---ITAIHSMFINKPPGT--- 631
P+ + I K+Q+ + V +Y E+ ++ DV+ IG ITA+H+M INKPP T
Sbjct: 92 PDSIDTITKVQDFTDEPVLFSYCENKKVTDVVRDLIGSPDTRITAMHTMLINKPPDTGAL 151
Query: 632 -ARHPPHQDLFYFPIRPVDKIIGSWTAVDHVNKDNGCLYVIPKSHKQXILYPHG 790
+RHP HQDL YFP RP + + +WTA++ +NK NGCL V+P + + L HG
Sbjct: 152 TSRHPMHQDLIYFPWRPEELTVCAWTAMEKINKQNGCLQVVPGTQARG-LQVHG 204
>AL110479-7|CAB54355.1| 288|Caenorhabditis elegans Hypothetical
protein Y105C5B.9 protein.
Length = 288
Score = 50.0 bits (114), Expect = 2e-06
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Frame = +2
Query: 461 EKNLKPEEYINKLQEILY--DDVFMTYGEHPRLLDVISQFIGDDITAIHSMFINKPPGTA 634
E + ++ +NK+ L+ D F + ++ ++ + + + SM+I K P
Sbjct: 84 ELTVPKDKALNKIGHGLHFLDPTFEKMTFNSKIQNIFKEIGYQEPGVVQSMYIFKQPKIG 143
Query: 635 RH-PPHQDLFYFPIRPVDKIIGSWTAVDHVNKDNGCLYVIPKSHK 766
H D + + P+D + G W A+D + +NGCL IP SHK
Sbjct: 144 GAVTDHVDSTFLRVDPIDHLTGVWIAIDEASVENGCLSFIPGSHK 188
>Z99281-46|CAB54455.3| 795|Caenorhabditis elegans Hypothetical
protein Y57G11C.32 protein.
Length = 795
Score = 31.5 bits (68), Expect = 0.74
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +2
Query: 230 KMPLKGLKVLPNPVFSELPQNYRLSEEQKSFYWENGYLVI 349
++PL+ +VLPNP++ E P + +EE K+F GY+ I
Sbjct: 201 ELPLESDEVLPNPIYEE-PGDQSETEEVKAFREIFGYIQI 239
>U40028-2|AAY55874.1| 1200|Caenorhabditis elegans Hypothetical
protein T05A7.11 protein.
Length = 1200
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 482 EYINKLQEILYDDVFMTYGEHPRLLDVISQF 574
EY+ KL +IL++D T+G +P ++ Q+
Sbjct: 594 EYLTKLYDILFNDETFTFGSNPSSPFLVIQY 624
>L12018-5|AAU87822.1| 557|Caenorhabditis elegans Twik family of
potassium channelsprotein 7 protein.
Length = 557
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 794 HHHGGIEYXAYETLE*H 744
+HH G+EY +YE LE H
Sbjct: 45 YHHVGVEYDSYEELERH 61
>Z66495-6|CAA91275.2| 547|Caenorhabditis elegans Hypothetical
protein C36A4.8 protein.
Length = 547
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Frame = +2
Query: 464 KNLKPEEYINKLQE--ILYDDVFMTYGEHPRLLDVISQFIGDDITAIHSMFINKPPGTAR 637
KN+ EEYIN L+E D++ + +L+ + QF+ ++I + F PP +
Sbjct: 203 KNVDIEEYINTLRENSTEIDEIDALF----QLMPTMRQFLRNNINQLMEKFHVAPPKKSE 258
Query: 638 HPPHQDLFYFPIRPVDKI 691
P ++ + + + ++ I
Sbjct: 259 KPANRRVSFASSQDLENI 276
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,317,531
Number of Sequences: 27780
Number of extensions: 386630
Number of successful extensions: 841
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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