Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_E24
         (693 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        24   1.0  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   4.1  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   4.1  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   7.2  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   9.6  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 480 ACMTHKRIFNLHPHHIVYGRSRSRPHVLSVE 388
           +C+T    F  HPH++V GR   +  V ++E
Sbjct: 119 SCVTKDEPFRPHPHNLV-GREGCKKGVCTME 148


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +3

Query: 21  FQMLVKLLYVTEMARTQSGIPT 86
           F++L+K +Y     +T++ +PT
Sbjct: 358 FELLIKGVYQVNPTKTRTNLPT 379


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 693 YLNKLCNIHFAQNILFTSLNNTVS 622
           Y   LC+  FAQ  +F S++  VS
Sbjct: 129 YSGSLCDQGFAQQPMFPSMSVNVS 152


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +3

Query: 327 HEIEASTHTSPHEAVGGPRYIPQTTRADVTC 419
           H I+  THT         R  P+TT A   C
Sbjct: 272 HLIQRRTHTRHTTTSHNTRGTPRTTPASSRC 302


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -1

Query: 474 MTHKRIFNLHPHHIVYGRSRSRP 406
           +TH    N +P H +Y  S   P
Sbjct: 338 LTHNIAHNPYPSHSIYPSSNLMP 360


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,303
Number of Sequences: 336
Number of extensions: 4179
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)