Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_E22
(680 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 130 1e-31
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 36 0.004
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz... 33 0.050
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 27 3.3
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch... 27 3.3
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 27 3.3
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 4.4
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 25 7.7
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc... 25 7.7
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom... 25 7.7
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 130 bits (315), Expect = 1e-31
Identities = 64/149 (42%), Positives = 94/149 (63%), Gaps = 2/149 (1%)
Frame = +2
Query: 239 EYEKAQQRSLNDPEGFWGEVGSEL-EWTKPWDRVLDDS-NAPFTKWWVGGEMSVCYNAVD 412
EY++ + S+NDP FWG + ++ W K + V+ S + + W+ G +S CYN VD
Sbjct: 34 EYKRMYEESINDPSTFWGNMARDMMTWDKQFSTVVQGSIDKADSAWFADGAISPCYNLVD 93
Query: 413 RHVVNGRGEQFALVHDSPLTDTVRKISYNELKDQVSRLAGKLTTLGVSKGARVLIYMPLV 592
RH + R + AL++++ + R I+Y EL VS+ AG L ++GV G RV IYMP++
Sbjct: 94 RHAI-ARPDAVALIYEADEPNQGRYITYRELLASVSQCAGALQSMGVGMGDRVAIYMPMI 152
Query: 593 PEAIIAMLATNRIGAIHSVVFGGFAAREL 679
PE IIAMLA R+GAIHSV+F GF+A +
Sbjct: 153 PETIIAMLAIVRLGAIHSVIFAGFSAESV 181
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 36.3 bits (80), Expect = 0.004
Identities = 20/65 (30%), Positives = 36/65 (55%)
Frame = +2
Query: 440 QFALVHDSPLTDTVRKISYNELKDQVSRLAGKLTTLGVSKGARVLIYMPLVPEAIIAMLA 619
+FAL + +R ++Y+EL ++ ++LA L + G G+ + +Y EA I+MLA
Sbjct: 2737 EFALDINQDSVQLIR-LTYSELNERANKLAHNLKSYGFRVGSIIAVYFDKCIEAFISMLA 2795
Query: 620 TNRIG 634
+ G
Sbjct: 2796 ILKAG 2800
>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 676
Score = 32.7 bits (71), Expect = 0.050
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 488 ISYNELKDQVSRLAGKLTTLGVSKGARVLIYMP 586
+S+N++ D+ R AG L LG++KG + +Y P
Sbjct: 97 LSFNDIYDKALRYAGALRKLGLNKGDKFELYAP 129
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -3
Query: 375 THHFVNGALLSSRTRSHGFVHSSSDPTSPQNPSGS 271
+HH V L S +R H +H+ S P S + S
Sbjct: 307 SHHNVRTTLFSDDSRFHSKIHTHSTPPSQMYSAAS 341
>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 401
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 485 KISYNELKDQVSRLAGKLTTLGVSKGARV 571
K SYN LK Q S L GK++ + + G R+
Sbjct: 69 KNSYNSLKQQHSNLLGKVSGIKSTLGERL 97
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -3
Query: 387 ISPPTHHFVNGALLSSRTRSHGFVHSSSDPTSPQNPSGSFNDLCW 253
I+ P+HH VN S +H++S SPQ+ SF+ W
Sbjct: 8 INKPSHHNVN-----YNGNSFNSIHATSFGMSPQSWGNSFSGQAW 47
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 384 SPPTHHFVNGALLSSRTRSHGFVHSSSDPTSPQNPSGSFND 262
S P N + S+ T S HS P SP +PS ++ D
Sbjct: 280 SQPPRPPTNASTRSTGTSS-SMAHSYDSPPSPSSPSDAYGD 319
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 177 LSSLIDDSNLLFSILLPTSFCWCILKP 97
L+S + + F+ +L T FCW +L P
Sbjct: 81 LASTLKQRVIFFTRVLLTFFCWTVLLP 107
>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +1
Query: 55 YIFNFFGFCLRLIFRF*NAPT--K*SWQQNREK 147
++F+ FG C ++FRF P+ K SW + EK
Sbjct: 75 FLFSLFGSC--MLFRFIKYPSTIKDSWNHHLEK 105
>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 25.4 bits (53), Expect = 7.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 655 KYNRVNGADTIGSEHSYNS 599
+Y+ NG T G+ HSY S
Sbjct: 303 RYSHANGVTTSGTTHSYTS 321
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,959,452
Number of Sequences: 5004
Number of extensions: 64096
Number of successful extensions: 176
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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