Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_E16
(733 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0656 - 5301048-5301441,5301779-5301976,5302056-5302228,530... 39 0.004
06_01_0079 - 633595-633985,634346-634543,634864-635036,635355-63... 36 0.025
02_05_0097 + 25796725-25796857,25797366-25797495,25798273-257988... 31 0.94
02_03_0351 + 18030656-18030823,18030963-18031113,18031214-180313... 29 2.9
06_03_0281 - 19109567-19109691,19110479-19110615,19111274-191118... 29 3.8
03_05_0952 + 29103879-29103983,29104103-29104600,29104693-291047... 29 3.8
03_05_0182 - 21679813-21680127 29 5.0
01_05_0604 - 23583244-23584989 29 5.0
05_06_0172 + 26138238-26138474,26138712-26139854 28 8.8
>11_01_0656 -
5301048-5301441,5301779-5301976,5302056-5302228,
5302691-5302935,5303014-5303191,5303578-5303760,
5303858-5303962,5304621-5304758,5304846-5305802
Length = 856
Score = 39.1 bits (87), Expect = 0.004
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +3
Query: 471 DKRDARRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIF 629
D D +R KLLLLG +G ST KQ + ++G+ ++ E+ ++ N+F
Sbjct: 435 DYLDQKRIQKLLLLGPDGAGTSTIFKQAKYLYGTRFTQEELENIKLIIQSNMF 487
>06_01_0079 -
633595-633985,634346-634543,634864-635036,635355-635599,
635683-635860,636291-636473,636769-636873,637709-637846,
637933-638925
Length = 867
Score = 36.3 bits (80), Expect = 0.025
Identities = 16/53 (30%), Positives = 31/53 (58%)
Frame = +3
Query: 471 DKRDARRELKLLLLGTGESGKSTFIKQMRIIHGSGYSDEDKRGFIKLVYQNIF 629
D D +R KLL+LG+ +G ST KQ ++++ + ++ E+ ++ N+F
Sbjct: 447 DYLDQKRIQKLLILGSPGAGTSTIFKQAKLLYDTRFTQEELDSIKLMIQSNMF 499
>02_05_0097 +
25796725-25796857,25797366-25797495,25798273-25798842,
25799604-25799650,25799908-25799976,25801437-25801699
Length = 403
Score = 31.1 bits (67), Expect = 0.94
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = +1
Query: 511 LELESRANLLSSSR*ESSTARVIATKTSVASSNSFT 618
LE E+R +LLSSS ++T AT T+ ASS+S T
Sbjct: 146 LEAEARLSLLSSSGAAATTTITAATTTTSASSSSTT 181
>02_03_0351 +
18030656-18030823,18030963-18031113,18031214-18031309,
18032027-18032103,18032627-18032706,18033216-18033276,
18034153-18034220,18034312-18034393,18034552-18034638,
18035009-18035086,18035336-18035455,18035554-18035730
Length = 414
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +3
Query: 417 EAKEQKRINQEIERQLRKDKRDARRELKL 503
E +E+KR ++I ++L +DK + RR+L L
Sbjct: 242 EKEEEKRAREKIRQKLEEDKAERRRKLGL 270
>06_03_0281 -
19109567-19109691,19110479-19110615,19111274-19111828,
19112784-19112989
Length = 340
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 308 GSGVPRLKGLPKGQGSAREDRLRPSALKNHGVLH--VRRSKGTKKDQSRNREATQKGQTR 481
GSG+P G +G+G + D L SA G ++G ++++ E G+ R
Sbjct: 6 GSGIPASVGRGRGRGHSTGDALVASAFGGLGKEEKAAASARGMEEEREMEEEQVALGEQR 65
Query: 482 CQKR 493
Q+R
Sbjct: 66 RQQR 69
>03_05_0952 +
29103879-29103983,29104103-29104600,29104693-29104794,
29105552-29105898,29105967-29106153,29106242-29106417,
29106976-29107065,29107066-29107322,29107593-29107687,
29107801-29107920,29108111-29108230,29108410-29108508,
29108588-29108689,29108884-29109111
Length = 841
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +2
Query: 314 GVPRLKGLPKGQGSAREDRLRPSALKNHGVLHVRRSKGTKKDQSRNREATQKGQTRCQKR 493
G RL+ + G+G +DR +P+AL +L + R + ++D+ + T + + R
Sbjct: 741 GKLRLEHVVIGKGQFEQDRAKPNALDEAELLALLRDEQDEEDRMIQTDITDEDLLKVMDR 800
Query: 494 TQ-TAPTWN 517
+ T P N
Sbjct: 801 SDLTGPPAN 809
>03_05_0182 - 21679813-21680127
Length = 104
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 370 SVLSRGALSFRQAFQPRHTTPEYIS 296
S S G F+ FQP+HT P Y++
Sbjct: 7 SAPSTGFTRFKARFQPQHTKPRYVT 31
>01_05_0604 - 23583244-23584989
Length = 581
Score = 28.7 bits (61), Expect = 5.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 253 PRLFTQVIQRPPLSIWRW 200
PRL ++ PPL WRW
Sbjct: 332 PRLIHDLVMAPPLDAWRW 349
>05_06_0172 + 26138238-26138474,26138712-26139854
Length = 459
Score = 27.9 bits (59), Expect = 8.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 632 GDAEYDTRHGPTNNTIWE 685
G +E + HGPTN+ WE
Sbjct: 384 GTSETEASHGPTNDVFWE 401
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,506,513
Number of Sequences: 37544
Number of extensions: 425794
Number of successful extensions: 1303
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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