Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_E13
(642 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 304 8e-84
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 228 6e-61
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 127 2e-30
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 99 6e-22
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 46 6e-06
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 43 4e-05
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 40 3e-04
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 38 0.001
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 38 0.001
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 38 0.002
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 37 0.003
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 36 0.007
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 36 0.007
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 33 0.026
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 31 0.11
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 31 0.14
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 31 0.19
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 31 0.19
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 29 0.43
SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr 1|||M... 29 0.57
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 26 5.3
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 26 5.3
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 5.3
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 25 9.3
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa... 25 9.3
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 25 9.3
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc... 25 9.3
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 304 bits (746), Expect = 8e-84
Identities = 141/159 (88%), Positives = 149/159 (93%)
Frame = +3
Query: 3 LLVGLXAAGKTTILYKLKLGXIVTTIPTIGFNVEXVXYKNISFTVWDVGGQDKIRPLWRH 182
L+VGL AAGKTTILYKLKLG IVTTIPTIGFNVE V Y+NISFTVWDVGGQDKIRPLWRH
Sbjct: 21 LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRNISFTVWDVGGQDKIRPLWRH 80
Query: 183 YFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNAMNAAEIT 362
YFQNTQG+IFVVDSNDRERI EA EEL RML+EDELRDA+LL+FANKQDLPNAMNAAEIT
Sbjct: 81 YFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDLPNAMNAAEIT 140
Query: 363 DKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 479
DKLGLHSLR+R WYIQATCATSGDGLYEGL+WLS LKN
Sbjct: 141 DKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLKN 179
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 228 bits (557), Expect = 6e-61
Identities = 106/158 (67%), Positives = 124/158 (78%)
Frame = +3
Query: 3 LLVGLXAAGKTTILYKLKLGXIVTTIPTIGFNVEXVXYKNISFTVWDVGGQDKIRPLWRH 182
L++GL AAGKTTILYKLKL V TIPT+GFNVE V YKNI F VWDVGGQDKIRPLWRH
Sbjct: 25 LMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDVGGQDKIRPLWRH 84
Query: 183 YFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNAMNAAEIT 362
YF T+GLIFVVDS D RI EAR+EL R++S+ E+RD +LL+ ANKQDLP A++ A+IT
Sbjct: 85 YFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDLPGALSPAQIT 144
Query: 363 DKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 476
D L L L++R W +Q TCA +GDGL EGL WLS K
Sbjct: 145 DVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWLSQNAK 182
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 127 bits (306), Expect = 2e-30
Identities = 59/158 (37%), Positives = 96/158 (60%)
Frame = +3
Query: 3 LLVGLXAAGKTTILYKLKLGXIVTTIPTIGFNVEXVXYKNISFTVWDVGGQDKIRPLWRH 182
LL+GL AGKTTIL L + PT GF + + + + FT+WD+GGQ +R W++
Sbjct: 20 LLLGLDNAGKTTILKCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKTLRNFWKN 79
Query: 183 YFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNAMNAAEIT 362
YF++T+ +I+VVDS D R+ E R L +L E++L +L+ ANK D+ A+++ EI+
Sbjct: 80 YFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSGALSSEEIS 139
Query: 363 DKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 476
L + ++ +W I + A +G + + + WL+N LK
Sbjct: 140 KILNISKYKSSHWRIFSVSALTGLNIKDAISWLANDLK 177
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 98.7 bits (235), Expect = 6e-22
Identities = 49/126 (38%), Positives = 73/126 (57%)
Frame = +3
Query: 3 LLVGLXAAGKTTILYKLKLGXIVTTIPTIGFNVEXVXYKNISFTVWDVGGQDKIRPLWRH 182
L +GL AGKTT+L+ LK + PT+ E + N+ FT +D+GG + R LWR
Sbjct: 24 LFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQARRLWRD 83
Query: 183 YFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNAMNAAEIT 362
YF G++++VD D ER+ E++ EL +L+ +EL LI NK D P A++ E+
Sbjct: 84 YFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARVPFLILGNKIDAPGAISEDELK 143
Query: 363 DKLGLH 380
LGL+
Sbjct: 144 AALGLY 149
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 45.6 bits (103), Expect = 6e-06
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 5/115 (4%)
Frame = +3
Query: 3 LLVGLXAAGKTTILYKLKLGXIVTT-IPTIGFNVEXVXY----KNISFTVWDVGGQDKIR 167
LL+G GK+ +L + + I TIG + + + K + +WD GQ++ R
Sbjct: 12 LLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFR 71
Query: 168 PLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDL 332
+ Y++ G+I V D D++ ++ L + + L+ NK D+
Sbjct: 72 TITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQE-IDRYAVEGVNRLLVGNKSDM 125
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 42.7 bits (96), Expect = 4e-05
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 LLVGLXAAGKTTILYKLKLGXIVTT-IPTIG--FNVEXVXY--KNISFTVWDVGGQDKIR 167
LL+G GK+ +L + + I TIG F + + K I +WD GQ++ R
Sbjct: 13 LLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 72
Query: 168 PLWRHYFQNTQGLIFVVDSNDRERIGEAR 254
+ Y++ G++ + D D++ R
Sbjct: 73 TITTAYYRGAMGILLLYDVTDKKSFDNVR 101
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 39.9 bits (89), Expect = 3e-04
Identities = 21/74 (28%), Positives = 35/74 (47%)
Frame = +3
Query: 117 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRD 296
K I +WD GQ+K R + R+Y++ G + V D +++ E L + +
Sbjct: 60 KRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTI 119
Query: 297 AVLLIFANKQDLPN 338
V+L +K DL N
Sbjct: 120 CVVLA-GSKSDLQN 132
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 38.3 bits (85), Expect = 0.001
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 5/115 (4%)
Frame = +3
Query: 3 LLVGLXAAGKTTILYKLKLGXI-VTTIPTIG--FNVEXVXYKN--ISFTVWDVGGQDKIR 167
+L+G GK+ +L + + + TIG F + N I +WD GQ++ R
Sbjct: 14 VLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYR 73
Query: 168 PLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDL 332
+ Y++ G + V D + L + L E + V+++ NK DL
Sbjct: 74 AITSAYYRGAVGALIVYDITKQSSFDNVGRWL-KELREHADSNIVIMLVGNKTDL 127
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 37.9 bits (84), Expect = 0.001
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = +3
Query: 84 TIGFNVEXVXYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER--IGEARE 257
T+G + ++ ++DVGGQ R W + F+N +IF V ND ++ A
Sbjct: 179 TLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLNDYDKKLYERAAP 238
Query: 258 ELMRMLSEDELRDAVL 305
E R++ L D+++
Sbjct: 239 ERNRLVESISLFDSII 254
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 37.5 bits (83), Expect = 0.002
Identities = 31/149 (20%), Positives = 62/149 (41%), Gaps = 12/149 (8%)
Frame = +3
Query: 78 IPTIGFNVEXVXYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF----------VVDSN 227
I T G + E + +DVGGQ R W H F+N L+F +V+ N
Sbjct: 219 IKTTGISEETFLLNRHHYRFFDVGGQRSERRKWIHCFENVTALLFLVSLAGYDQCLVEDN 278
Query: 228 DRERIGEAREELMRMLSEDELRDAVLLIFANKQDL-PNAMNAAEITDKL-GLHSLRNRNW 401
++ EA + + ++ +++F NK DL ++ + I + +
Sbjct: 279 SGNQMQEALLLWDSICNSSWFSESAMILFLNKLDLFKRKVHISPIQKHFPDYQEVGSTPT 338
Query: 402 YIQATCATSGDGLYEGLDWLSNQLKNANR 488
++Q C + + + G+ + + ++ NR
Sbjct: 339 FVQTQCPLADNAVRSGMYYFYLKFESLNR 367
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/82 (24%), Positives = 35/82 (42%)
Frame = +3
Query: 120 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDA 299
++ +WD GQ++ + L Y++N I V D + +A+ ++ L
Sbjct: 63 SVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAK-SWIKELQRQAPEGI 121
Query: 300 VLLIFANKQDLPNAMNAAEITD 365
V+ + NK DL A E D
Sbjct: 122 VIALAGNKLDLAQERRAVEKAD 143
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 35.5 bits (78), Expect = 0.007
Identities = 25/115 (21%), Positives = 51/115 (44%), Gaps = 5/115 (4%)
Frame = +3
Query: 3 LLVGLXAAGKTTILYKLKLGXIVTTIP-TIGFN-VEXVXY---KNISFTVWDVGGQDKIR 167
+ +G + GKT+++ + T TIG + + Y + + +WD GQ++ R
Sbjct: 15 VFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 74
Query: 168 PLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDL 332
L Y +++ I V D + E+ + + + D ++++ NK DL
Sbjct: 75 SLIPSYIRDSSVAIIVYDITNHNSFVNT-EKWIEDVRAERGDDVIIVLVGNKTDL 128
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 35.5 bits (78), Expect = 0.007
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Frame = +3
Query: 3 LLVGLXAAGKTTILYKLKLGXIVTT-IPTIGFNVEXVXYKN----ISFTVWDVGGQDKIR 167
+LVG GKTT + + G I T+G V + + I F VWD GQ+K+
Sbjct: 13 VLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEKLG 72
Query: 168 PLWRHYFQNTQGLIFVVDSNDR 233
L Y+ Q I + D R
Sbjct: 73 GLRDGYYIQGQCGIIMFDVTSR 94
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 33.5 bits (73), Expect = 0.026
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Frame = +3
Query: 3 LLVGLXAAGKTTILYKLKLGXIVTT-IPTIGFNVEX---VXYKNISFTVWDVGGQDKIRP 170
++VG A GKT++L LG T +PT+ N V K++ +WD GQ++
Sbjct: 12 VVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEYER 71
Query: 171 LWRHYFQNTQGLI--FVVDSND 230
L + ++ F +DS D
Sbjct: 72 LRPMSYAKAHIILVGFAIDSPD 93
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 31.5 bits (68), Expect = 0.11
Identities = 19/89 (21%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Frame = +3
Query: 6 LVGLXAAGKTTILYKLKLGXI-VTTIPTIGFNV--EXVXYKN--ISFTVWDVGGQDKIRP 170
++G + GKT+++ G + T+G N + + +N I+F++WD+GGQ +
Sbjct: 15 MIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQREFVN 74
Query: 171 LWRHYFQNTQGLIFVVDSNDRERIGEARE 257
+ + ++F+ D + + + +E
Sbjct: 75 MLPMVCNDAVAILFMFDLSRKSTLNSIKE 103
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 31.1 bits (67), Expect = 0.14
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Frame = +3
Query: 120 NISFTVWDVGGQDKIRPLW-----RHYFQNTQGLIFVVDSNDRE 236
N+ +WD GGQ+ + H F+N Q LI+V D RE
Sbjct: 50 NLVLNLWDCGGQEAFMENYLSAQRDHIFRNVQVLIYVFDVESRE 93
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 30.7 bits (66), Expect = 0.19
Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = +3
Query: 117 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERIGEAREELMRMLSEDE 287
K ++ +WD GQ++ + L +++ + V D N+ E + R+E + S
Sbjct: 55 KVVTLQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSN 114
Query: 288 LRDAVLLIFANKQDL 332
++ NK D+
Sbjct: 115 PETFPFILLGNKVDV 129
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 30.7 bits (66), Expect = 0.19
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Frame = +3
Query: 3 LLVGLXAAGKTTILYKLKLGXIVTTI-PTIGFNVEX---VXYKNISFTVWDVGGQDKIRP 170
+++G AAGKT++L G PTI N V +I ++WD GQ++
Sbjct: 17 VILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEYDQ 76
Query: 171 LWRHYFQNTQGLI--FVVDSND 230
L + +T ++ F VDS D
Sbjct: 77 LRSLSYSDTHVIMICFAVDSRD 98
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 29.5 bits (63), Expect = 0.43
Identities = 13/60 (21%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +3
Query: 117 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERIGEAREELMRMLSEDE 287
K ++ +WD GQ++ + L +++ + V + N+ + + R+E + S+DE
Sbjct: 55 KLVTLQLWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDE 114
>SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 29.1 bits (62), Expect = 0.57
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 10/111 (9%)
Frame = +3
Query: 219 DSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQ------DLPNAMNAAEITDKLGL- 377
D ND + + R+ +++L + VL + KQ +L +A N E+ + L
Sbjct: 46 DENDSHSMATIKSHFERLKRDEQLLNGVLKKYDAKQEVLSPEELRDAQNFLEMQEANSLD 105
Query: 378 HSLRNRNWYIQATCATSGDGLYEG--LDWLSNQLKN-ANR*PYVRQLAXKS 521
+S+R N ++ AT D Y+ L ++N++ A P++ Q+ K+
Sbjct: 106 NSIRGTNELLERAYATREDFDYQNSVLGNVTNRINGAAMSIPFINQILRKT 156
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 25.8 bits (54), Expect = 5.3
Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 8/151 (5%)
Frame = +3
Query: 6 LVGLXAAGKTTILYKLKLGXIVTTIPTIGFNVEXVXYKNISFTVWDVGGQDKIRPLWRHY 185
L+G +GKT++ +L TT+P+I N E V +K ++ V D+ G + +
Sbjct: 42 LIGPSDSGKTSLFCELIYKEKKTTVPSIEPN-EAV-WKYGAWLV-DLPGHPRAKRWITTK 98
Query: 186 FQ---NTQGLIFVVDSNDRER-IGEAREELMRMLSEDELRDAV-LLIFANKQDLPNAMNA 350
F N + ++FV++S +R + E L + + LLI NK DL A A
Sbjct: 99 FSGNYNVKAVVFVLNSATIDRDVHEVGLMLFDTILKCRKHHVPHLLIACNKFDLFTAQPA 158
Query: 351 AEITD--KLGLHS-LRNRNWYIQATCATSGD 434
+I K LH+ L +N +++ + D
Sbjct: 159 EKIQQLLKAELHNILEEKNLQLESIVSEDVD 189
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.8 bits (54), Expect = 5.3
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +3
Query: 228 DRERIGEAREELMRMLSEDELRDAVL----LIFANKQDLPNAMNAAEITDKLGLHSLRNR 395
D E+ + REE +R+L E +DA + + +DL + ++ A+++ K +S
Sbjct: 405 DEEKKKKEREEQVRLLQESADKDAEMNEASTATSENEDLKDDLSLADLSSKKTANSQATE 464
Query: 396 N 398
N
Sbjct: 465 N 465
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 25.8 bits (54), Expect = 5.3
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -3
Query: 448 PSYSPSPEVAHVAWMYQLRLRSECRPSL-SVISAAFIAFGRSCLFA 314
P+ SP PEV+H W+ L P L S + IAF CL A
Sbjct: 16 PNSSPDPEVSHKLWVSSLNKFQYTLPLLISNFAGLGIAF-IYCLIA 60
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 25.0 bits (52), Expect = 9.3
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +3
Query: 429 GDGLYEGLDWLSNQLKNAN 485
GD E +DWL + L+++N
Sbjct: 587 GDNTSENIDWLKHSLRDSN 605
>SPAC2G11.13 |atg22||autophagy associated protein Atg22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/20 (55%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = -3
Query: 172 SGLILSWPPTSHTV-KLMFL 116
SG+ILSW P+S + K++FL
Sbjct: 128 SGIILSWSPSSFLLGKIVFL 147
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 216 VDSNDRERIGEAREELMRMLSEDE 287
+DS++ E I +A+ E+ LSE+E
Sbjct: 430 IDSDEEETIDDAKSEMFVDLSEEE 453
>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 465
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 174 WRHYFQNTQGLIFVVDSNDRERI 242
W H++ NTQ FV D ND ++
Sbjct: 17 WTHFW-NTQESYFVYDPNDHAKV 38
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,521,869
Number of Sequences: 5004
Number of extensions: 48551
Number of successful extensions: 177
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -