Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_E11
(769 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom... 30 0.42
SPAC29A4.07 |srb6|med22|mediator complex subunit Srb6 |Schizosac... 29 0.55
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.7
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase... 27 2.2
SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr 3||... 27 2.2
SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual 27 3.0
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa... 27 3.0
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb... 27 3.9
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 27 3.9
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 5.2
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 26 6.8
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom... 25 9.0
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 25 9.0
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|... 25 9.0
>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 416
Score = 29.9 bits (64), Expect = 0.42
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 149 RLRNKKTIASWDYETNLTVHNE-QKLLQVSLEVASETKEYWKETMSYLWHEFEDP 310
+LRNK +A +D+E LT H + K+ Q + V + + +YL+ +F+ P
Sbjct: 39 QLRNKLQLAEFDFENGLTSHTDLVKMRQGQVGVQFFSCFIECKNPNYLYQDFDTP 93
>SPAC29A4.07 |srb6|med22|mediator complex subunit Srb6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 136
Score = 29.5 bits (63), Expect = 0.55
Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Frame = +2
Query: 131 LDEQTSRLRNKKTIASWDYETNLTVHNEQKLLQVSLEVASETKEYW---KETMSYLWHEF 301
LD + ++K T+A Y+ + + ++ L+V+ + K YW + S+ ++
Sbjct: 36 LDIAINEGKDKYTVAPEVYQIECHTVSMVRAVEQLLDVSRQIKSYWLTNSLSTSFPTVDY 95
Query: 302 EDPDLKRMFKKYTELGTSALPEDL 373
+PDL+++ + T+L L L
Sbjct: 96 SEPDLEKVKRTLTKLQNHLLEVSL 119
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 27.9 bits (59), Expect = 1.7
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -3
Query: 275 FPSNIPSFRLPPLRILVTISVRYGLSNSSHSPKRQSSSCS*AEKSARPKSS 123
+ I S + P I S Y +++SS +P SSS S + S+ KSS
Sbjct: 123 YSGTISSTSIAPSMIGTRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSS 173
>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
desaturase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 362
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +2
Query: 497 ATSSDAEELKYTWLEWHKAAGAPSKSNFTEYVQMENEAAKLNGYDTVAEW 646
A S D + +T+ E P KS ++ E A LNGY+ + +W
Sbjct: 21 ADSEDVHQFYWTYTE------EPHKSRRAAILKAHPEIASLNGYEPLTKW 64
>SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 327
Score = 27.5 bits (58), Expect = 2.2
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = +2
Query: 527 YTWLEWHKAAGAPSKSNFTEYVQMENEAAK-LNGY--DTVAEWWLXEYEATDSEDXFAXL 697
YT ++ + + + ++ E EAA + Y D + +L E + ED
Sbjct: 43 YTGAPYYSSMSSMLFGSDQSHIFCEKEAANVIKSYSPDLIVHPFLREKDKAGPEDSVDKC 102
Query: 698 WAQIKPLYEQIHAYVXG 748
+ IKP+ ++HA V G
Sbjct: 103 FELIKPMMGRLHAIVIG 119
>SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 296
Score = 27.1 bits (57), Expect = 3.0
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +2
Query: 422 KATICDYNNRTKCDLHVEPEITN-IFATSSDAEELKYTWLEWHKAAGAPSKSNFTEYVQM 598
K+T + N KC+ PE+T+ IF+TS D + + + AG S + + ++
Sbjct: 157 KSTGSGFTNFHKCEFTTLPEVTDRIFSTSIDCNYTFKHFDTFEELAGFDFNSIYEKVKEI 216
Query: 599 ENEAAKLNGYDTV 637
E L+ ++V
Sbjct: 217 TLETFALDDSESV 229
>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 27.1 bits (57), Expect = 3.0
Identities = 10/25 (40%), Positives = 20/25 (80%)
Frame = +3
Query: 501 QAAMLKNSSTHGLNGIRQRVLHRRV 575
++AML+N + + LNGI +++L +R+
Sbjct: 61 ESAMLRNKTKNELNGIIKKILDKRL 85
>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 710
Score = 26.6 bits (56), Expect = 3.9
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = +3
Query: 423 RQRSAIIIIGLNVICMLNLKSQTFLRQAAMLKNSSTHG 536
RQ II LN I ML L F+R +L S HG
Sbjct: 552 RQVIGIIFFALNAITMLLLILGIFIRTLIVLFRKSGHG 589
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 26.6 bits (56), Expect = 3.9
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = -3
Query: 185 SPKRQSSSCS*AEKSARPKSSRNLAQRIPLQLVLLPXPWAATRKTDAIAPRRASSP 18
SPK SS A + P+S + IP VL P P +AT + + ++ + SSP
Sbjct: 196 SPKALSSPTQGASSNVTPESPPE--KPIP-SFVLSPPPVSATNEANKLSDIQTSSP 248
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 26.2 bits (55), Expect = 5.2
Identities = 19/76 (25%), Positives = 35/76 (46%)
Frame = +2
Query: 317 KRMFKKYTELGTSALPEDLNQRLIVAINSMQSTYAKATICDYNNRTKCDLHVEPEITNIF 496
KR+ ++ L PE LNQR I +N + + K T D+ + + D V ++ +
Sbjct: 2263 KRLNEEGITLEERQKPEILNQRAITVLNRVSN---KLTGRDFKPQQQLD--VPSQVEKLI 2317
Query: 497 ATSSDAEELKYTWLEW 544
++ E L ++ W
Sbjct: 2318 LQATSIENLCLCYIGW 2333
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.8 bits (54), Expect = 6.8
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +2
Query: 377 QRLIVAINSMQSTYAKATICDYNNRTKCDLHVEPE 481
Q +V + ++ Y T+CDY++ K + + PE
Sbjct: 1345 QLFMVVLVNLGGMYHVVTVCDYDHDQKLTVPMRPE 1379
>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 594
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 529 VLEFFSIAACRKNVCDFRFNMQITFSPIIII 437
VL+FF I KNVC + F+P +++
Sbjct: 488 VLKFFFIIPIAKNVCYLWVFLYCPFTPFLVL 518
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 25.4 bits (53), Expect = 9.0
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Frame = +2
Query: 314 LKRMFKKYTELGTSALPEDLNQRLI-----VAINSMQSTYAKATICDYNNRTKCDLHVEP 478
LK ++ KY + G A ++ R + + I + ST K I D N + +E
Sbjct: 242 LKNLWNKYGDPGDVAFEAKVSVRTLSRPEPLTIKKVYSTLLK--IADSNGNGAQNRKLE- 298
Query: 479 EITNIFATSSDAEELKY 529
+T SS+AEE++Y
Sbjct: 299 -LTKFLLISSNAEEVRY 314
>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.4 bits (53), Expect = 9.0
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 614 KLNGYDTVAEWWLXEYEATDSEDXFAXLWAQIKPLYEQIHAYV 742
+LNGY TV W+ D+ D FA QI+ + I + +
Sbjct: 402 QLNGYLTVNADWIAYALLDDTTDAFAPFIEQIEDEVDTIDSMI 444
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,100,579
Number of Sequences: 5004
Number of extensions: 63682
Number of successful extensions: 203
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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