Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_E11
(769 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0713 - 5332145-5332351,5332675-5332893,5334347-5334559,533... 36 0.027
01_07_0380 + 43181564-43181639,43182053-43182218,43182494-431826... 36 0.036
10_06_0153 + 11285685-11285716,11288322-11288974,11289541-11289647 34 0.14
02_01_0031 - 187798-187887,187996-188179,188468-188640,188917-18... 30 2.3
03_02_0093 - 5581087-5581259,5581956-5582062,5582644-5582723 29 5.4
08_01_0307 - 2604863-2604931,2605177-2606136 28 7.1
06_01_0591 + 4261483-4261631,4261837-4262007,4262127-4262226,426... 28 7.1
08_02_1424 + 26982502-26983572,26984129-26984908,26988299-26990128 28 9.4
06_03_1496 - 30567968-30568210,30568345-30568513,30568635-305687... 28 9.4
05_04_0149 - 18441561-18442082,18442723-18442861,18443295-184433... 28 9.4
04_04_1292 - 32413046-32413807,32413901-32413936,32414037-324141... 28 9.4
04_04_1193 + 31634043-31634349,31634685-31634847,31635048-316366... 28 9.4
03_02_0671 + 10315260-10315370,10315984-10316027,10316141-103162... 28 9.4
>02_01_0713 -
5332145-5332351,5332675-5332893,5334347-5334559,
5334637-5334730,5334860-5335020,5335114-5335315,
5335619-5335784,5336208-5336286
Length = 446
Score = 36.3 bits (80), Expect = 0.027
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Frame = +2
Query: 221 LLQVSLEVASETKEYWKETMSYLWHEFEDPDLKRMFKKYTEL--GTSALPEDLNQRLIVA 394
LL LEV E +++ S L H+ + + + KY EL G+S++ ++L+Q L+ A
Sbjct: 55 LLNAVLEVEPNHSEAYRQRASVLRHKCRYKEAEGDYSKYLELKPGSSSVEKELSQ-LLQA 113
Query: 395 INSMQSTYAKATICDYN 445
N+++S Y + D++
Sbjct: 114 QNALESAYGQFESHDFS 130
>01_07_0380 +
43181564-43181639,43182053-43182218,43182494-43182695,
43182789-43182949,43183079-43183172,43183250-43183462,
43184917-43185135,43185458-43185661
Length = 444
Score = 35.9 bits (79), Expect = 0.036
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Frame = +2
Query: 221 LLQVSLEVASETKEYWKETMSYLWHEFEDPDLKRMFKKYTEL--GTSALPEDLNQRLIVA 394
LL LEV E +++ S L H+ + + + KY EL G+S++ ++L+Q L+ A
Sbjct: 54 LLNAVLEVDPNHSEAYRQRASVLRHKCRYKEAEGDYSKYLELKPGSSSVEKELSQ-LLQA 112
Query: 395 INSMQSTYAKATICDYN 445
N+++S Y + D++
Sbjct: 113 QNALESAYGQFESHDFS 129
>10_06_0153 + 11285685-11285716,11288322-11288974,11289541-11289647
Length = 263
Score = 33.9 bits (74), Expect = 0.14
Identities = 21/56 (37%), Positives = 25/56 (44%)
Frame = +2
Query: 569 KSNFTEYVQMENEAAKLNGYDTVAEWWLXEYEATDSEDXFAXLWAQIKPLYEQIHA 736
KS F Q + E GYDT A W YE T E W KPL+++ HA
Sbjct: 28 KSKFFLEHQAKWEKEGNKGYDTNAHGWRFAYELTFPEGEIPSDWGYSKPLWDE-HA 82
>02_01_0031 -
187798-187887,187996-188179,188468-188640,188917-189399,
189557-190213,190821-190837,191501-192041
Length = 714
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 173 ASWDYETNLTVHNEQKLLQVSLEVASETKEYWKE 274
A+W+++ NL V + L+Q L E+++ W E
Sbjct: 206 AAWEFDQNLNVAAARALMQTGLRSCPESEDMWIE 239
>03_02_0093 - 5581087-5581259,5581956-5582062,5582644-5582723
Length = 119
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 459 VICMLNLKSQTFLRQAAMLKNSSTHGLNGIRQRVLHRRVTSPNTFKWRTRL 611
V+C+ NL + L QA L+NS + +R R + +R + T W T L
Sbjct: 69 VVCVRNLAPEDILLQATRLRNSLGRKVVKLRTRHVTKRPSVQGT--WTTEL 117
>08_01_0307 - 2604863-2604931,2605177-2606136
Length = 342
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +2
Query: 299 FEDPDLKRMFKKYTELGTSALPEDLNQRLIVAINSMQSTYAKATICDYNNR 451
+ED D KY E+ + LPED ++ V + +T + + ++ R
Sbjct: 44 YEDEDNYESLVKYVEMTKALLPEDKRDKIKVPKKTKVATNKRTDVPEFGGR 94
>06_01_0591 +
4261483-4261631,4261837-4262007,4262127-4262226,
4263151-4263315,4263416-4263544,4263758-4263858,
4264527-4264596,4265080-4265331,4265828-4265897,
4266281-4266341,4266916-4267003,4267746-4267830,
4268168-4268234,4268442-4268559,4268843-4268923,
4269022-4269267,4269670-4269771,4269847-4269914,
4270040-4270171,4270283-4270430,4270504-4270790,
4270920-4271067,4271156-4271331,4271407-4271518,
4271614-4271667,4273134-4273244,4273317-4273478,
4273627-4273814,4273948-4274137,4274297-4274464,
4274832-4274912
Length = 1359
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/68 (22%), Positives = 31/68 (45%)
Frame = +2
Query: 461 DLHVEPEITNIFATSSDAEELKYTWLEWHKAAGAPSKSNFTEYVQMENEAAKLNGYDTVA 640
D E E+TN+ S E L + ++ G + +FT+ +++ E + Y+ +
Sbjct: 285 DEKAEAEVTNLENNQSIWELLTFKFVNPMMDIGITRQLDFTDLLELPVELRAASSYEKLL 344
Query: 641 EWWLXEYE 664
W E++
Sbjct: 345 SSWTVEHQ 352
>08_02_1424 + 26982502-26983572,26984129-26984908,26988299-26990128
Length = 1226
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +2
Query: 575 NFTEYVQMENEAAKLNGYDTVAEW-WLXEY 661
+FT YV + LNG T+ EW W+ Y
Sbjct: 277 DFTGYVTNKKYLVVLNGLSTIEEWDWIKTY 306
>06_03_1496 -
30567968-30568210,30568345-30568513,30568635-30568736,
30569087-30571855,30572402-30572430,30572546-30572659,
30572735-30572846,30574730-30574845,30574928-30575068,
30575121-30575243,30575346-30575478,30575842-30575972,
30576065-30576300,30577073-30577376
Length = 1573
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 305 LRTRARGNSWFPSNIPS 255
L T+ GN+WFP +IPS
Sbjct: 112 LETKNGGNTWFPRSIPS 128
>05_04_0149 - 18441561-18442082,18442723-18442861,18443295-18443352,
18443630-18443664,18444528-18444886,18445304-18445450,
18445849-18447954,18448300-18448494,18448629-18448709,
18448758-18448874,18449281-18449370,18449466-18449552,
18450293-18450315,18450675-18450804
Length = 1362
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -3
Query: 272 PSNIPSFRLPPLRILVTISVRYGLSNSSHSPKRQSSSCS*AEKSA 138
P+ +PS+ + + SV +GL ++ +P RQ +S +K+A
Sbjct: 1233 PTTLPSWSVAQSETTIQTSVAHGLQHTRPTPLRQPASSPANDKTA 1277
>04_04_1292 -
32413046-32413807,32413901-32413936,32414037-32414179,
32414263-32414419,32414518-32414679,32414860-32415107,
32415589-32415733
Length = 550
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 509 DAEELKYTWLEWHKAAGAPSKSNFTEYVQMENEAAKLNGYDTVAEWW 649
+AE++ TW + ++G K+ F + +K NG + V E+W
Sbjct: 60 NAEQIVQTWAKQFHSSGNEQKTPFLYLANDILQNSKRNGTEFVEEFW 106
>04_04_1193 + 31634043-31634349,31634685-31634847,31635048-31636622,
31636653-31637541,31639401-31641266
Length = 1599
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = +2
Query: 437 DYNNRTKCDLHVEPEITNIFATSSDAEELKYTWLEWHKAAGAPS 568
D N+ D H+ + + LKY W+ W+ A AP+
Sbjct: 873 DSNDVPSLD-HIPDTASEVLEGLEPHRNLKYLWISWYNGAKAPT 915
>03_02_0671 +
10315260-10315370,10315984-10316027,10316141-10316204,
10316278-10316392,10316504-10316571,10316917-10317014,
10317543-10317657,10318425-10318641,10319541-10319667,
10319803-10319857,10319997-10320093,10320748-10320876,
10320964-10321097,10321660-10321746,10321998-10322069,
10322320-10322359,10322535-10322779,10323587-10323764,
10323931-10324136,10324681-10324977
Length = 832
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 179 WDYETNLTVHNEQKLLQVSLEVASETKEYWKETMSYL-WHEFEDP 310
+DY T+ +E EVA+ K+ W + S+ W+ EDP
Sbjct: 231 YDYYNEETLVSEANESIAESEVANHPKKQWDDDCSWAEWYSAEDP 275
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,189,473
Number of Sequences: 37544
Number of extensions: 462159
Number of successful extensions: 1256
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1256
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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