Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_E07
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2...    26   2.7  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    25   6.3  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    25   6.3  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   8.4  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    25   8.4  

>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 15/65 (23%), Positives = 25/65 (38%)
 Frame = +3

Query: 138 RYHGXSHFKPPTMDELPVPKGSWQSHHDANQRRFNAVLLFGIXXXXXXXXXXKTSGLVYL 317
           R+   S F+  T D      GS     +   +  N++    +          K SG++YL
Sbjct: 67  RFRRDSTFESETSDHEDFSGGSENELDEETTKNANSIKKISLEEVEKQRKAIKRSGVIYL 126

Query: 318 NYSPP 332
           +  PP
Sbjct: 127 SRIPP 131


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 4   VVSXFSSLRPCVAPKCLKLPPQSALQSKC 90
           VVS  S    C+  +  KL P SAL  KC
Sbjct: 245 VVSLASRKNLCINNEVRKLRPTSALNEKC 273


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
 Frame = -1

Query: 235 RRWLASWCD--CHEPLGTGNSSMVGG 164
           RRWL       CH  +G GN S  GG
Sbjct: 568 RRWLVRLRQACCHPQVGFGNKSAFGG 593


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 42  SKVSQTSSTKRAPIKMFVTRQIASRFFQQTVRRYHGXSHFKP-PTMDELPVPKGSWQSHH 218
           SKV QT   +RA + ++  +Q      + T  + H   +F   P +D++   K SW+  H
Sbjct: 291 SKVVQTV-LERATLLVYTRKQ--QHIVKNT--KVHDNDYFSSIPNVDDIRSIKNSWKVFH 345

Query: 219 D 221
           D
Sbjct: 346 D 346


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 175 WMNYQCPKAHGSRT 216
           WM   CPK HG  T
Sbjct: 484 WMKTTCPKCHGPAT 497


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,581,288
Number of Sequences: 5004
Number of extensions: 27204
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)