Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_E07
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9384| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.2  
SB_32520| Best HMM Match : G_glu_transpept (HMM E-Value=4.9e-12)       29   2.8  
SB_56590| Best HMM Match : Pox_A32 (HMM E-Value=6.1)                   27   6.5  
SB_43852| Best HMM Match : DnaJ (HMM E-Value=1.7e-37)                  27   6.5  
SB_31032| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_25855| Best HMM Match : OATP (HMM E-Value=1.2e-06)                  27   6.5  
SB_25593| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_9384| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 111 SRFFQQT-VRRYHGXSHFKPPTMDELPVPKGSWQSHHDANQRRFNAVLL 254
           SRF +Q+ VR  HG  H K  + D + V + +W+S   A   +F A+ L
Sbjct: 2   SRFVRQSKVRHVHG-DHAKNDSYDNIRVSENTWESPFCAVNPKFVAISL 49


>SB_32520| Best HMM Match : G_glu_transpept (HMM E-Value=4.9e-12)
          Length = 1225

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = -1

Query: 196 LGTGNSSMVGGLK*LXPW*RRTVCWKNLDAIWRVTNILIGARFVEEV*DTLEQRKDATM 20
           L TG++    G+  +  + RRT    N+DA WR+ N+    R  E+V  TLE   D+ +
Sbjct: 104 LSTGSTISFAGVANILYYNRRTGKTSNIDASWRLPNL----RTTEDV-PTLETLGDSVL 157


>SB_56590| Best HMM Match : Pox_A32 (HMM E-Value=6.1)
          Length = 740

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = +3

Query: 21  IVASLRCSKVSQTSSTKRAPIKMFVTRQIASRFFQQTVRRYHGXSHFKPP--TMDELPVP 194
           +V  L   +  Q + T +   K+ +   +  R + +  R     SH +P   T+DE   P
Sbjct: 415 LVEGLPVRQTGQRNLTNKLRNKLLMNLHVRLRGWWRESR---APSHPRPDLNTLDESK-P 470

Query: 195 KGSWQSHHDANQRR 236
           +G+WQS  D  +RR
Sbjct: 471 EGAWQSGTDLTERR 484


>SB_43852| Best HMM Match : DnaJ (HMM E-Value=1.7e-37)
          Length = 399

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -3

Query: 137 THCLLEEPRCNLACYEHFDWSALCGGSLRHFGATQGRNDEXL 12
           TH L+   R    C  H  W+A C G    +G   GR +E L
Sbjct: 337 THELMLGIRMTYHCLTHNVWAAHCLGRELSYGKWLGRGNERL 378


>SB_31032| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 6/41 (14%)
 Frame = +3

Query: 132 VRRYHGXS----HFKPP--TMDELPVPKGSWQSHHDANQRR 236
           +RR+ G S    H +P   T+DEL  P+G+WQS  +  +RR
Sbjct: 838 LRRWPGESRAPNHTRPDLNTLDELK-PEGAWQSGTELTERR 877


>SB_25855| Best HMM Match : OATP (HMM E-Value=1.2e-06)
          Length = 918

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -3

Query: 137 THCLLEEPRCNLACYEHFDWSALCGGSLRHFGATQGRNDEXL 12
           TH L+   R    C  H  W+A C G    +G   GR +E L
Sbjct: 51  THELMLGIRMTYHCLTHNVWAAHCLGRELSYGKWLGRGNERL 92


>SB_25593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 746

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
 Frame = +3

Query: 3   RCFQXFIVASLRCSKVSQTSSTKRAPIKMFVTRQIASRFFQQTVRRYHGX---SHFKPP- 170
           R  +  +V SL   +  Q + T +  + M + + +      +  R + G    SH +P  
Sbjct: 442 RDLKEVLVLSLPERQTGQRNLTNKL-LTMSIIKTLPMNLHVRLRRWWRGSRAPSHPRPDL 500

Query: 171 -TMDELPVPKGSWQSHHDANQRR 236
            T+DE   P+G+WQS  D  +RR
Sbjct: 501 NTLDESE-PEGAWQSGTDLTERR 522


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,276,433
Number of Sequences: 59808
Number of extensions: 223039
Number of successful extensions: 644
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)