Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_E06
         (460 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   2.4  
SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces ...    25   4.2  
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy...    25   5.6  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   5.6  
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    24   9.7  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    24   9.7  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
 Frame = +1

Query: 187 HYCDCWC----KPGLIRDSIAHKCVKECPK 264
           HY  CWC    KP  +++ + H C   C K
Sbjct: 256 HYL-CWCGKQEKPEFVKNLVPHSCGDPCGK 284


>SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 110 GGHSAELIPRHEIMNNKTNQRFILP 36
           GG    L+  HE MN K + R++ P
Sbjct: 128 GGRVVRLLGNHEFMNAKGDWRYVHP 152


>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 88  INSAECPPDQYDPGPN 135
           I+SAEC  ++  PGPN
Sbjct: 337 IDSAECDAEEPSPGPN 352


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +2

Query: 65  YSLFRVSELTLRNVHRTNTIRVQIAPSRQSVHYEAHTQTGNTTVTAGASLAS 220
           +S   VS   +   + + +  +  +PS +       TQT ++T T G+S+AS
Sbjct: 175 FSYTNVSSSVIATAYTSASSTILSSPSVEQSTPSIITQTESSTTTEGSSVAS 226


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 118 YDPGPNCAFETICALRSAHSNRKH 189
           Y  GP+  F T C ++  H+ ++H
Sbjct: 46  YFYGPSIDFPTTCKIKQVHTLQRH 69


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +2

Query: 290  IIPISLLFGRIDDVIFYVK 346
            I  + L+FG+ D++++YVK
Sbjct: 1715 ISSLMLIFGKQDNILYYVK 1733


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,580,774
Number of Sequences: 5004
Number of extensions: 30136
Number of successful extensions: 62
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)