Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_E06
         (460 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0083 - 1046086-1047086,1047976-1048161,1048266-1049247           29   2.4  
10_02_0060 - 4808506-4808535,4808564-4809588,4810125-4810292,481...    28   4.2  
12_01_0981 + 9931542-9931606,9931779-9933105                           27   9.6  
04_01_0475 - 6196747-6197065,6197193-6197236,6198649-6198721,619...    27   9.6  

>10_01_0083 - 1046086-1047086,1047976-1048161,1048266-1049247
          Length = 722

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 154 CALRSAHSNRKHYCDCWCKPGLIRDSIAHKCVKECPKYDEIL 279
           C+      NR    DC CKPG+  D  A  C ++ P   +++
Sbjct: 347 CSSDGICKNRPGGYDCPCKPGMKGDGKAGTCTEKFPLVAKVI 388


>10_02_0060 -
           4808506-4808535,4808564-4809588,4810125-4810292,
           4811202-4811652
          Length = 557

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +1

Query: 133 NCAFETICALRSAHSNRKHYCDCWCKPGLIRDSIAHKCVKECP 261
           NC+F ++C       NR    DC CK G+  D     C +  P
Sbjct: 163 NCSFNSVCV------NRPGGFDCPCKRGMTGDGKRGTCTENFP 199


>12_01_0981 + 9931542-9931606,9931779-9933105
          Length = 463

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -3

Query: 128 PGSYWSGGHSAELIPRHEIMNNKTNQRFILPRFTH 24
           P  +W GGH A   P H+  N   +Q    P   H
Sbjct: 129 PTHFWEGGHGAHPEPYHQPYNPYYHQEPFHPPHHH 163


>04_01_0475 -
           6196747-6197065,6197193-6197236,6198649-6198721,
           6198823-6198933,6199023-6199196,6199285-6199466
          Length = 300

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 173 TQTGNTTVTAGASLAS*GTLSLTNV*KNARNTMKFWTSYI 292
           T+  +T  TAGAS  S    S TN+  N   TMK +  Y+
Sbjct: 253 TEAASTDSTAGASGTSSAGASGTNIDSNYYVTMKGYMEYM 292


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,995,712
Number of Sequences: 37544
Number of extensions: 196288
Number of successful extensions: 443
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)