Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_E03
(735 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 111 1e-25
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 111 1e-25
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 111 1e-25
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 111 1e-25
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 111 1e-25
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 111 1e-25
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 111 1e-25
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 111 1e-25
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 111 1e-25
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 111 1e-25
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 111 1e-25
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 29 0.91
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 27 3.7
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 3.7
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 26 6.4
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo... 25 8.5
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 25 8.5
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 8.5
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 111 bits (266), Expect = 1e-25
Identities = 63/172 (36%), Positives = 100/172 (58%), Gaps = 3/172 (1%)
Frame = +1
Query: 82 SEYTSPIV-LVRKDKQFEFNNEHRLVFNMLKEKLTSKPVLKIYEPKAETELHTDASSIAY 258
S+ T P+ L++KD ++++ +K+ L S PVL+ ++ + L TDAS +A
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAV 719
Query: 259 AAILLQKDDNSELHPVHYMSKRTTDAESKYTSYELEALAIIEGIKKFRHYLYG--KHFKI 432
A+L QK D+ + +PV Y S + + A+ Y+ + E LAII+ +K +RHYL + FKI
Sbjct: 720 GAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKI 779
Query: 433 VTDCKAFQMTLNKKDLAMSTRVARWILFLQDYDFTIEHREGSKMKHTDALSR 588
+TD + + + + R+ARW LFLQD++F I +R GS DALSR
Sbjct: 780 LTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSR 831
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 111 bits (266), Expect = 1e-25
Identities = 63/172 (36%), Positives = 100/172 (58%), Gaps = 3/172 (1%)
Frame = +1
Query: 82 SEYTSPIV-LVRKDKQFEFNNEHRLVFNMLKEKLTSKPVLKIYEPKAETELHTDASSIAY 258
S+ T P+ L++KD ++++ +K+ L S PVL+ ++ + L TDAS +A
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAV 719
Query: 259 AAILLQKDDNSELHPVHYMSKRTTDAESKYTSYELEALAIIEGIKKFRHYLYG--KHFKI 432
A+L QK D+ + +PV Y S + + A+ Y+ + E LAII+ +K +RHYL + FKI
Sbjct: 720 GAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKI 779
Query: 433 VTDCKAFQMTLNKKDLAMSTRVARWILFLQDYDFTIEHREGSKMKHTDALSR 588
+TD + + + + R+ARW LFLQD++F I +R GS DALSR
Sbjct: 780 LTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSR 831
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 111 bits (266), Expect = 1e-25
Identities = 63/172 (36%), Positives = 100/172 (58%), Gaps = 3/172 (1%)
Frame = +1
Query: 82 SEYTSPIV-LVRKDKQFEFNNEHRLVFNMLKEKLTSKPVLKIYEPKAETELHTDASSIAY 258
S+ T P+ L++KD ++++ +K+ L S PVL+ ++ + L TDAS +A
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAV 719
Query: 259 AAILLQKDDNSELHPVHYMSKRTTDAESKYTSYELEALAIIEGIKKFRHYLYG--KHFKI 432
A+L QK D+ + +PV Y S + + A+ Y+ + E LAII+ +K +RHYL + FKI
Sbjct: 720 GAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKI 779
Query: 433 VTDCKAFQMTLNKKDLAMSTRVARWILFLQDYDFTIEHREGSKMKHTDALSR 588
+TD + + + + R+ARW LFLQD++F I +R GS DALSR
Sbjct: 780 LTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSR 831
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 111 bits (266), Expect = 1e-25
Identities = 63/172 (36%), Positives = 100/172 (58%), Gaps = 3/172 (1%)
Frame = +1
Query: 82 SEYTSPIV-LVRKDKQFEFNNEHRLVFNMLKEKLTSKPVLKIYEPKAETELHTDASSIAY 258
S+ T P+ L++KD ++++ +K+ L S PVL+ ++ + L TDAS +A
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAV 719
Query: 259 AAILLQKDDNSELHPVHYMSKRTTDAESKYTSYELEALAIIEGIKKFRHYLYG--KHFKI 432
A+L QK D+ + +PV Y S + + A+ Y+ + E LAII+ +K +RHYL + FKI
Sbjct: 720 GAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKI 779
Query: 433 VTDCKAFQMTLNKKDLAMSTRVARWILFLQDYDFTIEHREGSKMKHTDALSR 588
+TD + + + + R+ARW LFLQD++F I +R GS DALSR
Sbjct: 780 LTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSR 831
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 111 bits (266), Expect = 1e-25
Identities = 63/172 (36%), Positives = 100/172 (58%), Gaps = 3/172 (1%)
Frame = +1
Query: 82 SEYTSPIV-LVRKDKQFEFNNEHRLVFNMLKEKLTSKPVLKIYEPKAETELHTDASSIAY 258
S+ T P+ L++KD ++++ +K+ L S PVL+ ++ + L TDAS +A
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAV 719
Query: 259 AAILLQKDDNSELHPVHYMSKRTTDAESKYTSYELEALAIIEGIKKFRHYLYG--KHFKI 432
A+L QK D+ + +PV Y S + + A+ Y+ + E LAII+ +K +RHYL + FKI
Sbjct: 720 GAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKI 779
Query: 433 VTDCKAFQMTLNKKDLAMSTRVARWILFLQDYDFTIEHREGSKMKHTDALSR 588
+TD + + + + R+ARW LFLQD++F I +R GS DALSR
Sbjct: 780 LTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSR 831
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 111 bits (266), Expect = 1e-25
Identities = 63/172 (36%), Positives = 100/172 (58%), Gaps = 3/172 (1%)
Frame = +1
Query: 82 SEYTSPIV-LVRKDKQFEFNNEHRLVFNMLKEKLTSKPVLKIYEPKAETELHTDASSIAY 258
S+ T P+ L++KD ++++ +K+ L S PVL+ ++ + L TDAS +A
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAV 719
Query: 259 AAILLQKDDNSELHPVHYMSKRTTDAESKYTSYELEALAIIEGIKKFRHYLYG--KHFKI 432
A+L QK D+ + +PV Y S + + A+ Y+ + E LAII+ +K +RHYL + FKI
Sbjct: 720 GAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKI 779
Query: 433 VTDCKAFQMTLNKKDLAMSTRVARWILFLQDYDFTIEHREGSKMKHTDALSR 588
+TD + + + + R+ARW LFLQD++F I +R GS DALSR
Sbjct: 780 LTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSR 831
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 111 bits (266), Expect = 1e-25
Identities = 63/172 (36%), Positives = 100/172 (58%), Gaps = 3/172 (1%)
Frame = +1
Query: 82 SEYTSPIV-LVRKDKQFEFNNEHRLVFNMLKEKLTSKPVLKIYEPKAETELHTDASSIAY 258
S+ T P+ L++KD ++++ +K+ L S PVL+ ++ + L TDAS +A
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAV 719
Query: 259 AAILLQKDDNSELHPVHYMSKRTTDAESKYTSYELEALAIIEGIKKFRHYLYG--KHFKI 432
A+L QK D+ + +PV Y S + + A+ Y+ + E LAII+ +K +RHYL + FKI
Sbjct: 720 GAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKI 779
Query: 433 VTDCKAFQMTLNKKDLAMSTRVARWILFLQDYDFTIEHREGSKMKHTDALSR 588
+TD + + + + R+ARW LFLQD++F I +R GS DALSR
Sbjct: 780 LTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSR 831
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 111 bits (266), Expect = 1e-25
Identities = 63/172 (36%), Positives = 100/172 (58%), Gaps = 3/172 (1%)
Frame = +1
Query: 82 SEYTSPIV-LVRKDKQFEFNNEHRLVFNMLKEKLTSKPVLKIYEPKAETELHTDASSIAY 258
S+ T P+ L++KD ++++ +K+ L S PVL+ ++ + L TDAS +A
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAV 719
Query: 259 AAILLQKDDNSELHPVHYMSKRTTDAESKYTSYELEALAIIEGIKKFRHYLYG--KHFKI 432
A+L QK D+ + +PV Y S + + A+ Y+ + E LAII+ +K +RHYL + FKI
Sbjct: 720 GAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKI 779
Query: 433 VTDCKAFQMTLNKKDLAMSTRVARWILFLQDYDFTIEHREGSKMKHTDALSR 588
+TD + + + + R+ARW LFLQD++F I +R GS DALSR
Sbjct: 780 LTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSR 831
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 111 bits (266), Expect = 1e-25
Identities = 63/172 (36%), Positives = 100/172 (58%), Gaps = 3/172 (1%)
Frame = +1
Query: 82 SEYTSPIV-LVRKDKQFEFNNEHRLVFNMLKEKLTSKPVLKIYEPKAETELHTDASSIAY 258
S+ T P+ L++KD ++++ +K+ L S PVL+ ++ + L TDAS +A
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAV 719
Query: 259 AAILLQKDDNSELHPVHYMSKRTTDAESKYTSYELEALAIIEGIKKFRHYLYG--KHFKI 432
A+L QK D+ + +PV Y S + + A+ Y+ + E LAII+ +K +RHYL + FKI
Sbjct: 720 GAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKI 779
Query: 433 VTDCKAFQMTLNKKDLAMSTRVARWILFLQDYDFTIEHREGSKMKHTDALSR 588
+TD + + + + R+ARW LFLQD++F I +R GS DALSR
Sbjct: 780 LTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSR 831
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 111 bits (266), Expect = 1e-25
Identities = 63/172 (36%), Positives = 100/172 (58%), Gaps = 3/172 (1%)
Frame = +1
Query: 82 SEYTSPIV-LVRKDKQFEFNNEHRLVFNMLKEKLTSKPVLKIYEPKAETELHTDASSIAY 258
S+ T P+ L++KD ++++ +K+ L S PVL+ ++ + L TDAS +A
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAV 719
Query: 259 AAILLQKDDNSELHPVHYMSKRTTDAESKYTSYELEALAIIEGIKKFRHYLYG--KHFKI 432
A+L QK D+ + +PV Y S + + A+ Y+ + E LAII+ +K +RHYL + FKI
Sbjct: 720 GAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKI 779
Query: 433 VTDCKAFQMTLNKKDLAMSTRVARWILFLQDYDFTIEHREGSKMKHTDALSR 588
+TD + + + + R+ARW LFLQD++F I +R GS DALSR
Sbjct: 780 LTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSR 831
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 111 bits (266), Expect = 1e-25
Identities = 63/172 (36%), Positives = 100/172 (58%), Gaps = 3/172 (1%)
Frame = +1
Query: 82 SEYTSPIV-LVRKDKQFEFNNEHRLVFNMLKEKLTSKPVLKIYEPKAETELHTDASSIAY 258
S+ T P+ L++KD ++++ +K+ L S PVL+ ++ + L TDAS +A
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAV 719
Query: 259 AAILLQKDDNSELHPVHYMSKRTTDAESKYTSYELEALAIIEGIKKFRHYLYG--KHFKI 432
A+L QK D+ + +PV Y S + + A+ Y+ + E LAII+ +K +RHYL + FKI
Sbjct: 720 GAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKI 779
Query: 433 VTDCKAFQMTLNKKDLAMSTRVARWILFLQDYDFTIEHREGSKMKHTDALSR 588
+TD + + + + R+ARW LFLQD++F I +R GS DALSR
Sbjct: 780 LTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSR 831
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.7 bits (61), Expect = 0.91
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2
Query: 674 IIAFNPLSLSCARLKSLCRSEN 609
++ ++PL LS ARLKSLC N
Sbjct: 96 VLEWDPLQLSTARLKSLCLYRN 117
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 26.6 bits (56), Expect = 3.7
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = +1
Query: 445 KAFQMTLNKKDLAMSTRVARWILFLQDYDFTIEHREGSKMKHTDALSRNPYVALIFSDLH 624
K +NK DL S + +W+ +L+++ TI R S +++ ++ + S+L
Sbjct: 195 KRLIFVINKIDLVPSEVLNKWVTYLRNFFPTIPMRSASGSGNSNLKHQSASASSTISNLL 254
Query: 625 SDLR 636
L+
Sbjct: 255 KSLK 258
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.6 bits (56), Expect = 3.7
Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 3/132 (2%)
Frame = +1
Query: 106 LVRKDKQFEFNNEHRLVFNMLKEKLTSKPVLKIYEPKAETELHTDASSI--AYAAILLQK 279
+V KDK E + F+ LK + + L I K E L S+ + + +
Sbjct: 314 IVHKDKLIEDLSTRISEFDNLKSE---RDTLSIKNEKLEKLLRNTIGSLKDSRTSNSQLE 370
Query: 280 DDNSELHPVHY-MSKRTTDAESKYTSYELEALAIIEGIKKFRHYLYGKHFKIVTDCKAFQ 456
++ EL + + + TDAESK +S+E E ++ I ++++ L K K+V + Q
Sbjct: 371 EEMVELKESNRTIHSQLTDAESKLSSFEQENKSLKGSIDEYQNNLSSKD-KMVKQVSS-Q 428
Query: 457 MTLNKKDLAMST 492
+ + LA +T
Sbjct: 429 LEEARSSLAHAT 440
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.8 bits (54), Expect = 6.4
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = +1
Query: 28 VXKQVKEWLEQGVIRVSFSEYTSPIVLVRKDKQFEFNNEHRLVFNMLKEKLTSKPVLKIY 207
+ ++ KEWL + + S ++SP+V +D F+ + + N+ T + I
Sbjct: 43 IFQRAKEWLTPSSWKKAISIFSSPVVNKHED-SFDSKTDEEYLQNV--STTTEDVSMLIN 99
Query: 208 EPKAE--TELHTDASSIAYAAILLQ 276
P E + H D S+ A +I+ Q
Sbjct: 100 TPVTEKYEQEHRDTSAQATPSIVEQ 124
>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
Length = 686
Score = 25.4 bits (53), Expect = 8.5
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +1
Query: 313 MSKRTTDAESKYTSYELEALAIIEGIKKFRHYLYGKHFKIVTDCKAFQMTL-NKKDLAMS 489
++KR DAE Y ELE+ I K F + F ++ + + L N K + +
Sbjct: 420 LAKRNKDAEDIYEEKELESKVPIREPKSFADFKNHPEFVLIRHLRREEALLPNAKPVKTA 479
Query: 490 T 492
T
Sbjct: 480 T 480
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 8.5
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Frame = +1
Query: 457 MTLNKKDLAMSTRVARWILFL-QDYDFTIEHREGSKMKHTDALSRNPYVALIFSDLHSDL 633
+ LNK DL ++ A W+ L ++Y H + +L + + F+ LHSD
Sbjct: 252 LVLNKVDLVPTSVAAAWVKILAKEYPTIAFHASINNSFGKGSLIQ---ILRQFASLHSDK 308
Query: 634 RRAQES-----DNGLNAIMNILRDGKLYN 705
++ + G ++I+N LR K+ N
Sbjct: 309 KQISVGLIGFPNAGKSSIINTLRKKKVCN 337
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.4 bits (53), Expect = 8.5
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +1
Query: 211 PKAETELHTDASSIAYAAILLQKDDNSELHPVHYMSKRTTDAESKYTSYELEAL 372
PK++T H SSI + L+Q + + + + K+ T + +Y S+ AL
Sbjct: 34 PKSKTTYHKPPSSIESVSTLIQPNKSQSVTSPYV--KQFTFSSKEYNSHNKHAL 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,723,112
Number of Sequences: 5004
Number of extensions: 55048
Number of successful extensions: 165
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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