Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_E03
         (735 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF499232-2|AAP29639.1| 1183|Homo sapiens pol protein protein.          31   3.2  
BC132822-1|AAI32823.1|  622|Homo sapiens hypothetical protein FL...    30   7.5  
BC041481-1|AAH41481.2|  368|Homo sapiens FLJ35848 protein protein.     30   7.5  
BC035159-1|AAH35159.1|  622|Homo sapiens hypothetical protein FL...    30   7.5  
AK093167-1|BAC04083.1|  604|Homo sapiens protein ( Homo sapiens ...    30   7.5  
AB209036-1|BAD92273.1|  345|Homo sapiens proteasome 26S ATPase s...    30   9.9  

>AF499232-2|AAP29639.1| 1183|Homo sapiens pol protein protein.
          Length = 1183

 Score = 31.5 bits (68), Expect = 3.2
 Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
 Frame = +1

Query: 34  KQVKEWL-EQGVIRV---SFSEYTSPIVLVRK--DKQ-FEFNNEHRLVFNMLKEKLTSKP 192
           KQV+++L   G  R+   +F+    P+  V K  D++ FE+ ++ +  F  LKEKL S P
Sbjct: 407 KQVRKFLGAAGFCRLWIPNFAVLAKPLYEVTKWGDREPFEWGSQQQQAFRELKEKLMSAP 466

Query: 193 VLKIYEPKAETELHTDASSIAYAAILLQKDDNSELHPVHYMSKRTTDAESKYTSYELEAL 372
            L +        L+        A  +L +       PV Y+SK+  D  SK     L AL
Sbjct: 467 ALGLPNLTKPFTLYVSERE-KMAVRVLTQTVGPWPRPVAYLSKQ-LDGVSKGWPPCLRAL 524

Query: 373 A 375
           A
Sbjct: 525 A 525


>BC132822-1|AAI32823.1|  622|Homo sapiens hypothetical protein
           FLJ35848 protein.
          Length = 622

 Score = 30.3 bits (65), Expect = 7.5
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 565 KHTDALSRNPYVALIFSDLHSDLRRAQESDN 657
           KH D LS+N Y  L+ S  HS+  R +  DN
Sbjct: 421 KHLDGLSQNTYQDLLESQGHSNSHRTRGGDN 451


>BC041481-1|AAH41481.2|  368|Homo sapiens FLJ35848 protein protein.
          Length = 368

 Score = 30.3 bits (65), Expect = 7.5
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 565 KHTDALSRNPYVALIFSDLHSDLRRAQESDN 657
           KH D LS+N Y  L+ S  HS+  R +  DN
Sbjct: 40  KHLDGLSQNTYQDLLESQGHSNSHRTRGGDN 70


>BC035159-1|AAH35159.1|  622|Homo sapiens hypothetical protein
           FLJ35848 protein.
          Length = 622

 Score = 30.3 bits (65), Expect = 7.5
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 565 KHTDALSRNPYVALIFSDLHSDLRRAQESDN 657
           KH D LS+N Y  L+ S  HS+  R +  DN
Sbjct: 421 KHLDGLSQNTYQDLLESQGHSNSHRTRGGDN 451


>AK093167-1|BAC04083.1|  604|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35848 fis, clone TESTI2006894. ).
          Length = 604

 Score = 30.3 bits (65), Expect = 7.5
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 565 KHTDALSRNPYVALIFSDLHSDLRRAQESDN 657
           KH D LS+N Y  L+ S  HS+  R +  DN
Sbjct: 458 KHLDGLSQNTYQDLLESQGHSNSHRTRGGDN 488


>AB209036-1|BAD92273.1|  345|Homo sapiens proteasome 26S ATPase
           subunit 5 variant protein.
          Length = 345

 Score = 29.9 bits (64), Expect = 9.9
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +1

Query: 520 QDYDFTIEHREGSKMKHTDALSRNPYVALIFSDLHSDLRRAQESDNGLNAIMNILRD 690
           + Y+  +E  +         LS+   + LI +D   +LRR Q   N LNA + +LR+
Sbjct: 1   KSYEMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLRE 57


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,565,957
Number of Sequences: 237096
Number of extensions: 1613718
Number of successful extensions: 2810
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2810
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8735159784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)