Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_E03
(735 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 77 2e-14
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 77 2e-14
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 77 2e-14
Z75554-3|CAA99955.2| 533|Caenorhabditis elegans Hypothetical pr... 32 0.37
Z66567-6|CAA91490.2| 281|Caenorhabditis elegans Hypothetical pr... 30 1.5
AC006644-4|AAF39835.1| 1030|Caenorhabditis elegans Hypothetical ... 30 2.0
AF022984-10|AAB69958.1| 358|Caenorhabditis elegans Hypothetical... 29 3.4
Z35637-6|CAA84685.1| 341|Caenorhabditis elegans Hypothetical pr... 28 7.9
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 76.6 bits (180), Expect = 2e-14
Identities = 50/179 (27%), Positives = 90/179 (50%), Gaps = 7/179 (3%)
Frame = +1
Query: 73 VSFSEYTSPIV-LVRKDKQFEFNNEHRLVFNMLKEKLTSKPVLKIYEPKAETE------L 231
++F++ S + L+ + + E + F LK+ + PVL + +A + +
Sbjct: 1273 LNFAQIASSLTSLISAKVAWIWEKEQEIAFQELKKLVCQTPVLAQPDVEAALKGDRPFMI 1332
Query: 232 HTDASSIAYAAILLQKDDNSELHPVHYMSKRTTDAESKYTSYELEALAIIEGIKKFRHYL 411
+TDAS A+L Q+ + + HP+ + SK + AE++Y +LEALA++ +++F+ +
Sbjct: 1333 YTDASRKGIGAVLAQEGPDGQQHPIAFASKALSPAETRYHITDLEALAMMFALRRFKTII 1392
Query: 412 YGKHFKIVTDCKAFQMTLNKKDLAMSTRVARWILFLQDYDFTIEHREGSKMKHTDALSR 588
YG + TD K L LA R+ RW + + ++D I + G DALSR
Sbjct: 1393 YGTAITVFTDHKPLISLLKGSPLA--DRLWRWSIEILEFDVKIVYLAGKANAVADALSR 1449
Score = 35.5 bits (78), Expect = 0.039
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Frame = +1
Query: 25 EVXKQVKEWLEQGVIRVSFSEYTSPIVLV-RKDKQFEFNNEHRLVFNMLKEKLTSKPVLK 201
E+ K +++ L Q VIR S S ++SP+VLV +KD ++R V ++K P ++
Sbjct: 1043 EIRKMIQKMLNQKVIRESKSPWSSPVVLVKKKDGSIRMCIDYRKVNKVVKNNAHPLPNIE 1102
Query: 202 -IYEPKAETELHTDASSIA 255
+ A +L+T IA
Sbjct: 1103 ATLQSLAGKKLYTVFDMIA 1121
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 76.6 bits (180), Expect = 2e-14
Identities = 50/179 (27%), Positives = 90/179 (50%), Gaps = 7/179 (3%)
Frame = +1
Query: 73 VSFSEYTSPIV-LVRKDKQFEFNNEHRLVFNMLKEKLTSKPVLKIYEPKAETE------L 231
++F++ S + L+ + + E + F LK+ + PVL + +A + +
Sbjct: 1176 LNFAQIASSLTSLISAKVAWIWEKEQEIAFQELKKLVCQTPVLAQPDVEAALKGDRPFMI 1235
Query: 232 HTDASSIAYAAILLQKDDNSELHPVHYMSKRTTDAESKYTSYELEALAIIEGIKKFRHYL 411
+TDAS A+L Q+ + + HP+ + SK + AE++Y +LEALA++ +++F+ +
Sbjct: 1236 YTDASRKGIGAVLAQEGPDGQQHPIAFASKALSPAETRYHITDLEALAMMFALRRFKTII 1295
Query: 412 YGKHFKIVTDCKAFQMTLNKKDLAMSTRVARWILFLQDYDFTIEHREGSKMKHTDALSR 588
YG + TD K L LA R+ RW + + ++D I + G DALSR
Sbjct: 1296 YGTAITVFTDHKPLISLLKGSPLA--DRLWRWSIEILEFDVKIVYLAGKANAVADALSR 1352
Score = 35.5 bits (78), Expect = 0.039
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Frame = +1
Query: 25 EVXKQVKEWLEQGVIRVSFSEYTSPIVLV-RKDKQFEFNNEHRLVFNMLKEKLTSKPVLK 201
E+ K +++ L Q VIR S S ++SP+VLV +KD ++R V ++K P ++
Sbjct: 946 EIRKMIQKMLNQKVIRESKSPWSSPVVLVKKKDGSIRMCIDYRKVNKVVKNNAHPLPNIE 1005
Query: 202 -IYEPKAETELHTDASSIA 255
+ A +L+T IA
Sbjct: 1006 ATLQSLAGKKLYTVFDMIA 1024
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 76.6 bits (180), Expect = 2e-14
Identities = 50/179 (27%), Positives = 90/179 (50%), Gaps = 7/179 (3%)
Frame = +1
Query: 73 VSFSEYTSPIV-LVRKDKQFEFNNEHRLVFNMLKEKLTSKPVLKIYEPKAETE------L 231
++F++ S + L+ + + E + F LK+ + PVL + +A + +
Sbjct: 1187 LNFAQIASSLTSLISAKVAWIWEKEQEIAFQELKKLVCQTPVLAQPDVEAALKGDRPFMI 1246
Query: 232 HTDASSIAYAAILLQKDDNSELHPVHYMSKRTTDAESKYTSYELEALAIIEGIKKFRHYL 411
+TDAS A+L Q+ + + HP+ + SK + AE++Y +LEALA++ +++F+ +
Sbjct: 1247 YTDASRKGIGAVLAQEGPDGQQHPIAFASKALSPAETRYHITDLEALAMMFALRRFKTII 1306
Query: 412 YGKHFKIVTDCKAFQMTLNKKDLAMSTRVARWILFLQDYDFTIEHREGSKMKHTDALSR 588
YG + TD K L LA R+ RW + + ++D I + G DALSR
Sbjct: 1307 YGTAITVFTDHKPLISLLKGSPLA--DRLWRWSIEILEFDVKIVYLAGKANAVADALSR 1363
Score = 35.5 bits (78), Expect = 0.039
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Frame = +1
Query: 25 EVXKQVKEWLEQGVIRVSFSEYTSPIVLV-RKDKQFEFNNEHRLVFNMLKEKLTSKPVLK 201
E+ K +++ L Q VIR S S ++SP+VLV +KD ++R V ++K P ++
Sbjct: 957 EIRKMIQKMLNQKVIRESKSPWSSPVVLVKKKDGSIRMCIDYRKVNKVVKNNAHPLPNIE 1016
Query: 202 -IYEPKAETELHTDASSIA 255
+ A +L+T IA
Sbjct: 1017 ATLQSLAGKKLYTVFDMIA 1035
>Z75554-3|CAA99955.2| 533|Caenorhabditis elegans Hypothetical
protein ZC455.4 protein.
Length = 533
Score = 32.3 bits (70), Expect = 0.37
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = +1
Query: 220 ETELHTDASSIAYAAILLQKDDNSELHPVHYMSKRTTDAESKYTSYELEALAIIEGIKKF 399
+TELH D S + +L + D L+ Y+ + S +T L ALA + G F
Sbjct: 131 DTELHYDLKSRQFDVVLSEAFDFCGLYLASYLEMPSII--STFTGNRLNALAPVLGEPSF 188
Query: 400 RHYL 411
HYL
Sbjct: 189 LHYL 192
>Z66567-6|CAA91490.2| 281|Caenorhabditis elegans Hypothetical
protein ZK455.5 protein.
Length = 281
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/77 (22%), Positives = 33/77 (42%)
Frame = +1
Query: 484 MSTRVARWILFLQDYDFTIEHREGSKMKHTDALSRNPYVALIFSDLHSDLRRAQESDNGL 663
MS + +L L + + + KH + N Y+ + + S L++ + N +
Sbjct: 57 MSPNSSGLVLILNKHALNMTYNWLCNTKHLKGVHENSYIVTLDEESSSALKKTWPNVNQV 116
Query: 664 NAIMNILRDGKLYNDFY 714
N ++ L+D Y D Y
Sbjct: 117 NIVVPGLKDSFNYGDGY 133
>AC006644-4|AAF39835.1| 1030|Caenorhabditis elegans Hypothetical
protein F55A3.3 protein.
Length = 1030
Score = 29.9 bits (64), Expect = 2.0
Identities = 25/106 (23%), Positives = 47/106 (44%)
Frame = +1
Query: 154 VFNMLKEKLTSKPVLKIYEPKAETELHTDASSIAYAAILLQKDDNSELHPVHYMSKRTTD 333
V N +KEK +S+ V + E ++ + ++A+ + KDD E+ + ++ TT
Sbjct: 132 VGNFVKEKFSSEFVSSWNKALEEGGVNKNDVTLAFTHLFAVKDD-KEMDLIRKSAQATT- 189
Query: 334 AESKYTSYELEALAIIEGIKKFRHYLYGKHFKIVTDCKAFQMTLNK 471
+ +T+ + II+ K+ RH + F Q L K
Sbjct: 190 --ASWTAARARYVEIIDQEKRVRHSVLSNEFAAFMKDSKVQQALAK 233
>AF022984-10|AAB69958.1| 358|Caenorhabditis elegans Hypothetical
protein ZK488.1 protein.
Length = 358
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/53 (28%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Frame = -1
Query: 216 FW-FINFQYRFTGQLFLKHIEN*SMFIVK--FKLLILSDKNNWASIFRKAYPN 67
FW F+N +Y+ + Q+F N + I++ + + D+++ +++RK+YPN
Sbjct: 147 FWKFLNKRYK-SAQIFFAFFPNFQLKILECIWHIWATLDRHSATAVYRKSYPN 198
>Z35637-6|CAA84685.1| 341|Caenorhabditis elegans Hypothetical
protein C03C10.1 protein.
Length = 341
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 262 PHMLYLRHLYEVLFLLLVHKFSIQVYWS 179
P +YLR L+ +LF L H++ W+
Sbjct: 271 PDYMYLRQLFRILFRTLNHQYDYTFDWT 298
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,722,148
Number of Sequences: 27780
Number of extensions: 299865
Number of successful extensions: 764
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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