Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_E03
         (735 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    25   0.98 
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   3.0  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   3.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   6.9  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 232 EVLFLLLVHKFSIQVYWSTFP 170
           ++LFL+L   F + V+W  +P
Sbjct: 79  DLLFLILGLPFELSVFWQQYP 99


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -3

Query: 343 YSQRQLFACSYNVLDVVHCCHLSVII 266
           YS+     C   +L+ VH CH + ++
Sbjct: 6   YSEADASHCIQQILESVHHCHHNGVV 31


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 444 QSFSNDTE*KRSSNEYKSGTMDIVLTR 524
           +S +N       S EY+S +M  V+TR
Sbjct: 686 RSVANSPTKNADSREYRSNSMGAVMTR 712


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +1

Query: 580 LSRNPYVALIFSDLHSDLRRAQESDNGLNAIMNILRD 690
           LSRN    L  +    DLR+ QE     NAI+ I  D
Sbjct: 219 LSRNEITRLQENSPLLDLRQLQELHLQRNAIVEIAGD 255


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 269 YYRKMTTVNYIQYII*ASEQLTLRVNIQVM 358
           YY K  T  + QYI  +S  L  +  I ++
Sbjct: 386 YYSKHNTQQFTQYIPESSSNLQEKTKIDLL 415


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,352
Number of Sequences: 438
Number of extensions: 3577
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)