Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_D24
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.34
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 29 0.77
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma... 28 1.0
SPCC14G10.03c |ump1||proteasome maturation factor Ump1 |Schizosa... 27 2.4
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr... 26 4.1
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 26 5.5
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 25 7.2
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar... 25 7.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 9.5
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 25 9.5
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 25 9.5
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.9 bits (64), Expect = 0.34
Identities = 23/97 (23%), Positives = 34/97 (35%)
Frame = +3
Query: 177 LPLEQNFNNYQPQQQEYRSAKPVDDFRPKVQLETSTYIPIIRFDKEQGTDGSYKTSYETG 356
+P+ Q NYQ Q Y+ D + L P +F+ G S
Sbjct: 29 MPINQGGMNYQQQTYPYQQPYQPDGYAGNTMLPFQQSQPATQFNNGFGYASQPTGSVADY 88
Query: 357 NNIQAQEQGYLKTVGDNQDNTALVQQGSYTYTAPGWS 467
Q Q GY + +NT +Q T PG++
Sbjct: 89 GQQQQQMYGYNGMMPQTMNNTGFMQP-QQTGAIPGFA 124
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 28.7 bits (61), Expect = 0.77
Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +3
Query: 186 EQNFNNYQPQQQEYRSAKPVDDFRPK-VQLETSTYIPIIRFDKEQGTDGSYKTSYETGNN 362
+ F + + Q+++Y + P++ RP+ + + YI I + GTD ++ E +
Sbjct: 178 QDEFEDEERQEEKYETGPPIESVRPEALGISDDDYIQIYEVFGD-GTDYAFALEDEDAED 236
Query: 363 IQAQEQGYLKTV 398
+ +E LKT+
Sbjct: 237 -ELEESVSLKTI 247
>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 387
Score = 28.3 bits (60), Expect = 1.0
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 215 LGLIVVEVLFKWELVFHLLFWLQRNLPLGKSRRNGNKS 102
+GL+V+ + W + +HL++ L R P+ + R S
Sbjct: 20 IGLLVIVGTWLWSVCYHLIYILNRYQPISPNPRGSLNS 57
>SPCC14G10.03c |ump1||proteasome maturation factor Ump1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 129
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 144 SLKPEQQVEDQLPLEQNFNNYQPQQQEYR 230
S+ +VE++ PLE N++ QQQ+ R
Sbjct: 25 SIPAVHRVENKHPLESRLKNWEAQQQQIR 53
>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 323
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +3
Query: 237 KPVDDFRPKVQLETSTYIPIIRFDKEQGTDGSYKTSYETGNNIQAQEQGYLKT 395
KP+ D +PK + +T T + I R+ Q + K + + QE+ + T
Sbjct: 106 KPMQDEKPKTEADTRT-LKIARYRMRQNLEKELKALSKDSETNEEQERKFWLT 157
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 132 QRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRSAKPVDDFRPKVQ 269
Q++ + +QQ + Q +Q Q QQQ+ + P + F P Q
Sbjct: 257 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKQAPQNAFFPNPQ 302
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 247 MTSDLKSNWRPVPTS 291
M+S LKS W PVP++
Sbjct: 1 MSSQLKSTWAPVPST 15
>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 256 DLKSNWRPVPTSPLSVSIRNKEPTEATKLHMK 351
DLK +W+ VP+S + + P + KL +K
Sbjct: 430 DLKEHWKEVPSSFTDILTQKTIPCKDHKLKIK 461
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 65 HIRNHEAADRNLRSYCRCGGSSPKEGFVEARTASGRPTP 181
H ++ AD +R+ GS+ G E ASG P P
Sbjct: 419 HASSNTNADNIIRALGDVAGSARAAGLREIAAASGSPMP 457
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = +1
Query: 181 HLNKTSTTISP---SNRNIGQQNQSMTSDLKSNWRPVPTSPLSVSIRNK 318
HL K+ST + S+ +G+QN ++ + + +RP P LS S R++
Sbjct: 88 HLEKSSTLENLKRYSSTLLGRQNDAVIDEPFAPFRPPPRVTLSESRRDR 136
>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1205
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/59 (22%), Positives = 31/59 (52%)
Frame = +1
Query: 154 QNSKWKTNSHLNKTSTTISPSNRNIGQQNQSMTSDLKSNWRPVPTSPLSVSIRNKEPTE 330
++S+ + N K + +P+ RN+ +++ S ++ N+ P+S +S +E +E
Sbjct: 1139 KSSRRRKNEKRRKLNEQ-NPNIRNVPERSSSRFQGIRINYSEAPSSSEEISEEEEEISE 1196
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,758,179
Number of Sequences: 5004
Number of extensions: 57966
Number of successful extensions: 218
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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