Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_D24
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0320 + 42708082-42708324,42708359-42708409,42708987-427091... 32 0.46
07_01_0577 - 4286048-4286186,4286600-4286660,4286957-4287089,428... 30 1.9
06_01_0741 - 5510159-5510581,5510862-5511124,5511223-5511400,551... 29 4.3
05_05_0201 + 23206859-23206998,23207858-23207936,23208121-232082... 29 4.3
03_01_0614 + 4515515-4515540,4515988-4516209,4516681-4516768,451... 28 5.6
01_03_0212 + 13842142-13842634,13842727-13843319 28 5.6
01_03_0209 - 13820980-13821572,13821665-13822157 28 5.6
10_01_0036 + 427678-428029,431043-431968 28 7.5
09_02_0439 + 9406451-9407178,9407225-9407603,9407887-9408038,940... 28 7.5
08_02_0749 - 20769224-20770535,20770649-20771510,20771622-207732... 28 7.5
04_03_0452 - 16052449-16052856,16053017-16053321,16053383-16054334 28 7.5
03_04_0148 - 17708737-17709027,17709270-17709518,17709713-177098... 28 7.5
12_02_0518 - 19937507-19938481,19938805-19939151,19939246-19939387 27 9.9
06_02_0179 + 12668623-12669591 27 9.9
>01_07_0320 +
42708082-42708324,42708359-42708409,42708987-42709122,
42709226-42709275,42709978-42710066,42710398-42710434,
42710435-42710471,42710588-42710733,42711099-42711241,
42711735-42711768,42711962-42712064,42712236-42712381,
42712982-42713323,42713416-42713656,42713733-42713788,
42713852-42713920
Length = 640
Score = 31.9 bits (69), Expect = 0.46
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Frame = +1
Query: 463 GQVITVEYTADEFGFRVSGDHIPTPPP-VSAEIQKGLD-LIYAGI--KANQERAAIXAKS 630
G + +E T F ++G+ P+PPP VS + GLD L Y I +A++ R A+ A S
Sbjct: 15 GDAVLLEITDASF---IAGEADPSPPPPVSVDDLAGLDPLPYPTIWVRADRTRQALAAPS 71
Query: 631 NPEA 642
+P++
Sbjct: 72 SPDS 75
>07_01_0577 -
4286048-4286186,4286600-4286660,4286957-4287089,
4287286-4287350,4288346-4288451,4288529-4288750,
4289619-4289852,4289948-4290037,4290605-4291507
Length = 650
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/44 (43%), Positives = 20/44 (45%)
Frame = +2
Query: 506 SEFPVTTSLPLPLYRLKFKKALTLSTPASRLTRNAPPXKPSQTP 637
S F SLPLP + KK L TPA R PP P TP
Sbjct: 22 SPFSPPPSLPLPSALMPPKKR-RLFTPAPRHAATPPPPPPPPTP 64
>06_01_0741 -
5510159-5510581,5510862-5511124,5511223-5511400,
5511411-5511698,5511801-5511899,5511973-5512440,
5512559-5512744,5512887-5513004,5513035-5513228
Length = 738
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 151 SQNSKWKTNSHLNKTSTTISPS-NRNIGQQNQSMTSDLKSNWRPVPTSPLSVSIRNK 318
SQ +W T S N+ S ++ + + GQ N + S S W PVP + +R++
Sbjct: 537 SQMHQWTTLSGSNEVSVRVTMHRSTDPGQPNGVVLSAATSIWLPVPCDHVFAFVRDE 593
>05_05_0201 +
23206859-23206998,23207858-23207936,23208121-23208219,
23208561-23208674,23208762-23208910,23209010-23209091,
23209170-23209255,23209520-23209750,23209830-23210727
Length = 625
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +1
Query: 166 WKTNSHLNKTSTTISPSNRNIGQQNQSMTSDLKSNWRPVPTSPLSVSIRNKEPTEATK 339
W + +N T+ P+ + QN + S +N P P+SP + R + P+ ATK
Sbjct: 488 WAMPASVNSTNP-FQPATYQM--QNPPVASVAPTNTYPAPSSPYAAPPRQQVPSPATK 542
>03_01_0614 +
4515515-4515540,4515988-4516209,4516681-4516768,
4517084-4517123,4517259-4517305,4517464-4517584,
4517931-4518091
Length = 234
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = +1
Query: 130 PKGRFR*SQNSKWKTNSHLNKTSTTISPSNRNIG-QQNQSMTSDLKSNWRPVPTSPLSVS 306
P F+ + W S + +S +PS+ N+G Q S S S +P P +
Sbjct: 17 PDPNFQDNPTQPWYPQSVVGSSSHPSTPSSSNVGPHQRASDNSQSSSRAQPSPAEAAGII 76
Query: 307 IRNKE 321
R K+
Sbjct: 77 ARLKD 81
>01_03_0212 + 13842142-13842634,13842727-13843319
Length = 361
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 463 GQVITVEYTADEFGFRVSGDHIPTPPPVS 549
G + + E+ GF SG H P P P+S
Sbjct: 110 GDLTSTEFVQQFTGFNASGFHSPPPTPIS 138
>01_03_0209 - 13820980-13821572,13821665-13822157
Length = 361
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 463 GQVITVEYTADEFGFRVSGDHIPTPPPVS 549
G + + E+ GF SG H P P P+S
Sbjct: 110 GDLTSTEFVQQFTGFNASGFHSPPPTPIS 138
>10_01_0036 + 427678-428029,431043-431968
Length = 425
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +1
Query: 481 EYTADEFGFRVSGDHIPTPPP 543
EYT F FRVSGD PPP
Sbjct: 38 EYTPVLFFFRVSGDDDQPPPP 58
>09_02_0439 +
9406451-9407178,9407225-9407603,9407887-9408038,
9408432-9408504,9409255-9409275
Length = 450
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 540 GRGRDVVTGNSETELVSGVLDGNDLTIQGLCM 445
G GR VV + GVLDG+ L G+CM
Sbjct: 386 GAGRGVVGAGGAGGVGGGVLDGSALGAGGVCM 417
>08_02_0749 -
20769224-20770535,20770649-20771510,20771622-20773263,
20773357-20773701,20773858-20773952,20774218-20774344,
20774430-20774435
Length = 1462
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 154 QNSKWKTNSHLNKTSTTISPSNRNIGQQNQSMTSDLKS 267
+++ T + NK+ST + SN +GQ +Q S+LK+
Sbjct: 644 ESTNLATVTVFNKSSTDLGWSNDKLGQTSQQSISELKN 681
>04_03_0452 - 16052449-16052856,16053017-16053321,16053383-16054334
Length = 554
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 172 TNSHLNKTSTTISPSNRNIGQQNQSMTSDLKSNWRPV 282
T S L K S P ++ ++ MTS+ +W P+
Sbjct: 77 TTSELEKDSNAAKPCRSDMNREPTKMTSEATRSWCPI 113
>03_04_0148 -
17708737-17709027,17709270-17709518,17709713-17709851,
17710050-17710268,17710360-17710735,17711741-17711909
Length = 480
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 156 EQQVEDQLPLEQNFNNYQ-PQQQEYRSAKPVDDFRPKVQLETSTYIPIIRFDKEQ 317
E QVE L++ + + P + R A FR +LE YIP+ DKE+
Sbjct: 99 EAQVETTNQLKRIVDCIEKPLSNKVRHALETPSFRRMKRLEARLYIPLYEEDKEE 153
>12_02_0518 - 19937507-19938481,19938805-19939151,19939246-19939387
Length = 487
Score = 27.5 bits (58), Expect = 9.9
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = -2
Query: 557 ISADTGGGVGMWSPETLKPNSSAVYSTVMT*P-SRGCVCIGSLLDQSSVVLVITDCLQIT 381
++ + GG G W KP V + V+T + I S++ VL T
Sbjct: 257 VAGNGNGGGGAWKEVATKPGVRRVLAIVLTLQFFQQASGIDSVVLYGPRVLAAAGVASNT 316
Query: 380 LLLSLNVV 357
LLL LNVV
Sbjct: 317 LLLGLNVV 324
>06_02_0179 + 12668623-12669591
Length = 322
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 603 LVSLDAGVDKVKAFLNFSRYRGRGRDVVTG 514
++ + AG D V+ F+R RGRG V++G
Sbjct: 114 VLEVAAGTDIVECVCEFARRRGRGVSVLSG 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,195,790
Number of Sequences: 37544
Number of extensions: 430683
Number of successful extensions: 1364
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1359
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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