Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_D23
(497 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.92
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_47787| Best HMM Match : DUF1556 (HMM E-Value=3.4) 29 1.6
SB_9457| Best HMM Match : PHD (HMM E-Value=3.3e-08) 29 2.1
SB_24894| Best HMM Match : TSP_1 (HMM E-Value=1.8e-10) 29 2.8
SB_13421| Best HMM Match : Harpin (HMM E-Value=0.62) 29 2.8
SB_50253| Best HMM Match : HYR (HMM E-Value=2.6e-20) 28 3.7
SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_41787| Best HMM Match : Frizzled (HMM E-Value=0) 28 4.9
SB_3993| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 4.9
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_38785| Best HMM Match : adh_short (HMM E-Value=2.4e-06) 27 6.5
SB_32226| Best HMM Match : PID (HMM E-Value=3.9e-30) 27 6.5
>SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 30.3 bits (65), Expect = 0.92
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = +3
Query: 123 TSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSG 302
T + +T ++ GT + T TS A NT+ T S T + + ++S
Sbjct: 383 TQNSNTTTTTTIAPAPEGTKSNTTVTSKPAWLTQNSNTT-TTTSTIATPKTPDTTAASSA 441
Query: 303 TTSAPKAPSP 332
TS+P AP+P
Sbjct: 442 DTSSPNAPTP 451
>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2317
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = +3
Query: 141 STHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAP 317
+T S+TK TA +T T A + T+ ++S T + S ST+GTT+AP
Sbjct: 1005 TTSASMTK--HATAAPITTNGTTAEPISTDGTTVLSMS---TARTTTASMSTAGTTAAP 1058
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = +3
Query: 171 RGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAP 317
R TAT ++ T A ++ T+ +++S + T +AP+S T GTT+AP
Sbjct: 565 RTTATPMSIDGTTAAPISSDGTTASSMSTDGT-TAAPVS--TDGTTAAP 610
Score = 28.3 bits (60), Expect = 3.7
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = +3
Query: 123 TSKQHLSTHGSLTKIRR---GTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGS 293
T+ +ST G+ T R TA ++ T A + T+ A IS + T +AP+S
Sbjct: 1453 TASAPMSTDGTNTVPRSMDGTTAAPMSMDGTTAVPMSTDGTTAAPISTDGT-TAAPIS-- 1509
Query: 294 TSGTTSAP 317
T GTT+AP
Sbjct: 1510 TDGTTAAP 1517
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = +3
Query: 123 TSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSG 302
T+ ++T+G+ T+ T ST A +T+ T+S + ST G
Sbjct: 1064 TTAAPITTNGTTTEPMSTDERNATTMSTDGTTAAPMSTNRTTVSPMSMDRTTAAPISTGG 1123
Query: 303 TTSAPKA 323
T +AP++
Sbjct: 1124 TNTAPRS 1130
Score = 27.1 bits (57), Expect = 8.6
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = +3
Query: 141 STHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPK 320
ST G+ R T ST A+ +T T+S + + ST GTT+AP+
Sbjct: 1180 STDGTTAVPRSMDGTTSAPMSTDGTTIASMSTQGTTVSPMSMDRTTAVPISTGGTTTAPR 1239
Query: 321 A 323
+
Sbjct: 1240 S 1240
>SB_47787| Best HMM Match : DUF1556 (HMM E-Value=3.4)
Length = 382
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +3
Query: 165 IRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAP--MSGSTSGTTSAPKAPSPV 335
+ + T ++ T TVA A +++ ATISR ++ T GT S P P P+
Sbjct: 11 LSKETTSRTTSERTVALSSVAHSSTRATISRPTGSYNSSHRTIPGTRGTRSLPNGPGPL 69
>SB_9457| Best HMM Match : PHD (HMM E-Value=3.3e-08)
Length = 344
Score = 29.1 bits (62), Expect = 2.1
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Frame = +3
Query: 42 CHFLLK*IQETAK***AICLR*SNRPPTSKQHLSTHGSLTKIRR---GTATKVTWTSTVA 212
C +K ++E A+ R + PP++ + + RR T TK T A
Sbjct: 214 CTLCIKKMREATSSTTALKNRQPDAPPSNSRTFAAARPSQSFRRPAPSTETKSFAPPTTA 273
Query: 213 RKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPSPVGFRS 347
+ FA S+A + + P+SG GT+SA + + G +S
Sbjct: 274 QSFAIPGLSNAASTSK-----QPISGGVGGTSSATSSGASTGQKS 313
>SB_24894| Best HMM Match : TSP_1 (HMM E-Value=1.8e-10)
Length = 171
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -1
Query: 347 GSKSYRRRCLRRAGCPTCRPTHWGRETCTLS*NSSMARIFRRELSGNGGSP 195
G K RRR R C T +HWG +C S +R + + GGSP
Sbjct: 55 GHKHRRRRYCSRVNCQTSNWSHWG--SCHYHSTQSRSRNIIKN-AACGGSP 102
>SB_13421| Best HMM Match : Harpin (HMM E-Value=0.62)
Length = 375
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +3
Query: 150 GSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAPKAPS 329
GS++K+ G+ ++V+W S AA SH S + G +A + + + + A S
Sbjct: 301 GSISKVSCGSISQVSWGSIPKSHGAASLKSHGAASLKSHG-AASLKSHVAASLKSHGAAS 359
Query: 330 P 332
P
Sbjct: 360 P 360
>SB_50253| Best HMM Match : HYR (HMM E-Value=2.6e-20)
Length = 525
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 320 LRRAGCPTCRPTHWGRETC 264
++R GCPT P H G TC
Sbjct: 157 IKRKGCPTLIPPHRGTATC 175
>SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 611
Score = 28.3 bits (60), Expect = 3.7
Identities = 19/69 (27%), Positives = 27/69 (39%)
Frame = +3
Query: 108 SNRPPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMS 287
+N + + ST S A T+TS R + + +T TIS C A
Sbjct: 154 ANTSANTSANTSTDTSTDTSPDTRANTSTYTSANTRTYTSTSTRANTISSTCANTCANTR 213
Query: 288 GSTSGTTSA 314
+TS T A
Sbjct: 214 SNTSANTRA 222
Score = 27.9 bits (59), Expect = 4.9
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 159 TKIRRGTAT-KVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSA 314
T R T++ + + ST A + NTS T + SA S +TS TSA
Sbjct: 110 TPTRANTSSYTIPYASTDASTYTIANTSANTSANTSANTSANTSANTSANTSA 162
>SB_41787| Best HMM Match : Frizzled (HMM E-Value=0)
Length = 542
Score = 27.9 bits (59), Expect = 4.9
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +2
Query: 242 CYYFKRVYRSLCPNEWVDKWDNQR 313
C Y+++ R L N W++ W Q+
Sbjct: 443 CLYYEQSNRELWDNSWIEGWKRQK 466
>SB_3993| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 543
Score = 27.9 bits (59), Expect = 4.9
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Frame = +2
Query: 137 PFDPRFPNQNQTRHC----YQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWD 304
P R N +RH Y SYV F K +G+K + +RV R P D
Sbjct: 412 PLVKRRRNLQLSRHTPVNTYPSYVVFENLPKYKGKKLKSA---ERVKRCDSPKPSPSSSD 468
Query: 305 NQRAEGTF 328
N+ A+ TF
Sbjct: 469 NEDADATF 476
>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 4303
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 116 PADLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQK 217
P +TAP P+ P + + C SYV F +K
Sbjct: 3290 PEIQRTAPVSPQTPIEYKCNKCRNSYVSFSEMKK 3323
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 113 SPADLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQK 217
+P +TAP P+ P + + C SYV F +K
Sbjct: 3499 TPEMQETAPVSPQTPIEYKCNKCRNSYVSFSEMKK 3533
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 116 PADLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQK 217
P +TAP P+ P + + C SYV F +K
Sbjct: 3710 PEIQRTAPVSPQTPIEYKCNKCSNSYVSFSEMKK 3743
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 113 SPADLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQK 217
+P +TAP P+ P + + C SYV F +K
Sbjct: 3919 TPEMQETAPVSPQTPIEYKCNKCSNSYVSFSEMKK 3953
>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3297
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +3
Query: 177 TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAP 317
TA ++ T A + T+ A +S + T +APMS T GTT+AP
Sbjct: 2419 TAAPMSTDGTTAAPMSTDGTTAAPMSTDGT-TAAPMS--TDGTTAAP 2462
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +3
Query: 177 TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAP 317
TA ++ T A + T+ A +S + T +APMS T GTT+AP
Sbjct: 2429 TAAPMSTDGTTAAPMSTDGTTAAPMSTDGT-TAAPMS--TDGTTAAP 2472
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +3
Query: 177 TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAP 317
TA ++ T A + T+ A +S + T +APMS T GTT+AP
Sbjct: 2439 TAAPMSTDGTTAAPMSTDGTTAAPMSTDGT-TAAPMS--TDGTTAAP 2482
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +3
Query: 177 TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAP 317
TA ++ T A + T+ A +S + T +APMS T GTT+AP
Sbjct: 2449 TAAPMSTDGTTAAPMSTDGTTAAPMSTDGT-TAAPMS--TDGTTAAP 2492
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +3
Query: 177 TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAP 317
TA ++ T A + T+ A +S + T +APMS T GTT+AP
Sbjct: 2459 TAAPMSTDGTTAAPMSTDGTTAAPMSTDGT-TAAPMS--TDGTTAAP 2502
Score = 27.1 bits (57), Expect = 8.6
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +3
Query: 177 TATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSGSTSGTTSAP 317
TA ++ T A T+ A IS + T + PMS T GTT+AP
Sbjct: 2565 TAAPMSMDRTTAAPMITDETTAAPISTDVT-TAVPMS--TDGTTAAP 2608
>SB_38785| Best HMM Match : adh_short (HMM E-Value=2.4e-06)
Length = 267
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +2
Query: 83 IISNMPEMIKSPADLKTAPFDPRFPNQNQTRHCYQSYVD 199
++ ++PE ++ A KT PF PR + ++ H QS ++
Sbjct: 211 LLESLPEKVRI-ALAKTVPFPPRLGHPDEYAHLVQSVME 248
>SB_32226| Best HMM Match : PID (HMM E-Value=3.9e-30)
Length = 591
Score = 27.5 bits (58), Expect = 6.5
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 174 GTATKVTWTSTVARKFAAKNTSHATISRECTGLSAPMSG--STSGTTSAPKAPSPV 335
GT T STVA + + +T S T S+ ++G TSG TS+P + +PV
Sbjct: 260 GTQATSTAPSTVANQQQSSRAFVSTPS-SVTSASSVVNGPTETSGMTSSPSSTAPV 314
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,791,680
Number of Sequences: 59808
Number of extensions: 291284
Number of successful extensions: 811
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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