Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_D22
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    31   0.19 
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    27   2.4  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   5.5  
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch...    26   5.5  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    26   5.5  
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      26   7.2  
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    25   9.5  
SPBC14C8.12 |rpb8||DNA-directed RNA polymerase I, II and III sub...    25   9.5  

>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 21/80 (26%), Positives = 35/80 (43%)
 Frame = +3

Query: 54  PDSPANRSSPHSRNMSKRSRTPSNNHSVSVSPKKFXXXXXXXXXXXXXXXRNIVTPPKKK 233
           P S ++ SSP+S   S    +  N+ S+S SP+ +                 + +    +
Sbjct: 177 PSSVSSHSSPYSTTSSTSLYSLYNDISLSCSPEPYLPLSPTRSPARTPSPIRLYSSDALR 236

Query: 234 QRSPKNPKNDRSSLTPPNSY 293
            +SP +P  +   LTPPN Y
Sbjct: 237 PQSPLSPSVE--YLTPPNPY 254


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 377 GTFSPSFIGFLICMLIIFTRRHRSFC 300
           G F    IG L+C   +    HR FC
Sbjct: 333 GVFESEKIGVLLCKFSVLPSNHRKFC 358


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 51  TPDSPAN--RSSPHSRNMSKRSRTPSNNHSVSVS 146
           TP +PA   +SS H+R  SK++  PS+  + S +
Sbjct: 497 TPSTPAKSAQSSKHARRPSKQASAPSSPGTTSAA 530


>SPBC543.08 |||phosphoinositide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 250

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
 Frame = -3

Query: 426 ISKLKRNDCDNF--Y*TN---GNVFSFFYRLSYLYAYNLYKETQIFLFFCS---YWVELM 271
           I KL+R D   F  Y T    G+++S +     + +Y    +  I L F     +W  L+
Sbjct: 16  ILKLRRKDILLFEIYATTLLLGSIYSIYVDKWSITSYFGNSKNLINLIFVKRGWFWTSLV 75

Query: 270 KIYHSWD 250
             YH+WD
Sbjct: 76  YFYHAWD 82


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/39 (25%), Positives = 24/39 (61%)
 Frame = +1

Query: 328 IISIQIRKPIKEGENVPIRLIKVIAVIPLQLRNLYLDLT 444
           +I I I + + +GEN P+ ++  +  + L + + Y++L+
Sbjct: 529 LIDINIPEVVTDGENAPVDILSEVKELCLYVWDNYVELS 567


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = +3

Query: 216 TPPKKKQRSPKNPKNDRSSLTPPNSYKR----TERSVSPCKD 329
           +PP    R+P +PK+D + +   +   R    +E+S+SP  +
Sbjct: 286 SPPASPSRTPASPKSDSALMDEDSDLSRRHSLSEQSLSPVSE 327


>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 240 SPKNPKNDRSSLTPPNSYKRTERSVSPCKDYK 335
           +PK     R S + P S  R +RS S  ++YK
Sbjct: 49  NPKQSTVSRKSFSAPTSPTRNKRSGSSSQEYK 80


>SPBC14C8.12 |rpb8||DNA-directed RNA polymerase I, II and III
           subunit Rpb8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 125

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 21/97 (21%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
 Frame = +1

Query: 382 RLIKVIAVIPLQLRNLYLDLTHVVFPKRKQSVHML---------DVQKVVQEVILVLLHQ 534
           R+ ++ AV      NL LD+   ++P  K +   L         D+++    ++   +++
Sbjct: 23  RVSRITAVSGQNDMNLTLDINSQIYPLEKDATFSLQITSNLNSPDLKEAADYIMYGKVYR 82

Query: 535 TDPQLNEK*KSLQSTQGLEVTLEDVHQ--VRVNLNHI 639
            +   +EK     S  GL + +E  H+   R++L+H+
Sbjct: 83  VEEAKDEKVSVYVSFGGLLMAIEGSHRKLYRLSLDHV 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,144,810
Number of Sequences: 5004
Number of extensions: 35528
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)