Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_D22
         (803 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968...    30   2.5  
03_05_0850 + 28206166-28206767,28207648-28207891,28208076-282083...    29   5.7  
02_04_0109 + 19812544-19814474,19814574-19814607                       28   10.0 

>10_08_0043 -
           14390398-14391531,14391850-14393691,14393800-14396825,
           14397510-14397609
          Length = 2033

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +1

Query: 415 QLRNLYLDLTHVVFPKRKQSVHMLDVQKVVQEVILVLLHQTDPQLNEK*KSLQSTQGLEV 594
           ++ N   DL ++V  K  Q +H+L  + V  E+++  LH     L E    L+S  GL +
Sbjct: 790 EVENSNTDLENIV-AKHTQDIHVLREKNVSTELMIKELHHELDALKELNVKLESEMGLHI 848


>03_05_0850 +
           28206166-28206767,28207648-28207891,28208076-28208389,
           28209013-28209067
          Length = 404

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 48  LTPDSPANRSSPHSRNMSKRSRTPSNNH 131
           L P S + R SPHS  +S  S TPS  H
Sbjct: 12  LPPSSSSPRISPHSTPVSLTSATPSGVH 39


>02_04_0109 + 19812544-19814474,19814574-19814607
          Length = 654

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 66  ANRSSPHSRNMSKRSRTPSNNHSVSVSPKKF 158
           ++RS+ HS +   RSR  S +HS   S K F
Sbjct: 389 SDRSTSHSTSKCSRSRAHSPSHSAHSSSKSF 419


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,592,251
Number of Sequences: 37544
Number of extensions: 190468
Number of successful extensions: 561
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)