Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_D22
         (803 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6936| Best HMM Match : TP2 (HMM E-Value=1.1)                        36   0.029
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)                 33   0.27 
SB_645| Best HMM Match : No HMM Matches (HMM E-Value=.)                33   0.36 
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.47 
SB_13913| Best HMM Match : WH2 (HMM E-Value=8.8e-05)                   30   2.5  
SB_53730| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_12735| Best HMM Match : PT (HMM E-Value=0.36)                       28   7.7  

>SB_6936| Best HMM Match : TP2 (HMM E-Value=1.1)
          Length = 256

 Score = 36.3 bits (80), Expect = 0.029
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
 Frame = +3

Query: 63  PANRSSPHSRNMSK---RSRTPSNNHSVSVSPKKFXXXXXXXXXXXXXXXRNIVTPPKK- 230
           P +RS   SR+ S+   RSR  S ++S+S+SP                  R   +P ++ 
Sbjct: 106 PESRSRSGSRSKSRSRSRSRGRSRSYSISISPDSHKSRSESPSSDGESPDRQRPSPHRRS 165

Query: 231 KQRSPKNPKNDRSSLTPPNSY 293
           + R+ K+ + D+ + T PNSY
Sbjct: 166 RPRNRKDRQLDKKTKTLPNSY 186


>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
          Length = 440

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 22/83 (26%), Positives = 37/83 (44%)
 Frame = +3

Query: 69  NRSSPHSRNMSKRSRTPSNNHSVSVSPKKFXXXXXXXXXXXXXXXRNIVTPPKKKQRSPK 248
           +RS   SR   K  ++ S +HS S S KK                R   +P  KK+ + K
Sbjct: 355 SRSISQSRKKVKSKKSRSRSHSNSPSRKKARSKKSRSRSLSKSKKRRSRSPITKKESNSK 414

Query: 249 NPKNDRSSLTPPNSYKRTERSVS 317
              + R S++P +  ++  +S+S
Sbjct: 415 RHSHSR-SMSPDSIKEKRSQSIS 436



 Score = 31.1 bits (67), Expect = 1.1
 Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
 Frame = +3

Query: 81  PHSRNMSKRSRTPSNNHSVSVSPKKFXXXXXXXXXXXXXXXRNIVTPPKKKQRSP-KNPK 257
           P S     RSR+PS   S S SP+K                R     P+K+ RSP K  +
Sbjct: 175 PRSGTSKSRSRSPSGRKSRSRSPRKRSRSPRKMLRSPRKRSRT----PRKRSRSPRKRSR 230

Query: 258 NDRSSLTPPNSYKRTER 308
           + R     P    R+ R
Sbjct: 231 SPRKGSHTPKKRSRSPR 247


>SB_645| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 684

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 25/88 (28%), Positives = 36/88 (40%)
 Frame = +3

Query: 72  RSSPHSRNMSKRSRTPSNNHSVSVSPKKFXXXXXXXXXXXXXXXRNIVTPPKKKQRSPKN 251
           RS   S +   RSR+P    S S SP +                R+  +PPK++ RSP  
Sbjct: 128 RSKSSSPSRRARSRSPGRRRSRSRSPAR-----------RRTAARSSPSPPKRQGRSPGR 176

Query: 252 PKNDRSSLTPPNSYKRTERSVSPCKDYK 335
           P N  +    P + KR+       K+ K
Sbjct: 177 PSNVTAEKNEPETPKRSPVRSRKAKEEK 204


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 216  TPPKKKQRSPKN-PKNDRSSLTPPNSYKRTERSVSP 320
            +PP++++RSP N P   RSS  PP   KR     SP
Sbjct: 929  SPPRRRRRSPSNSPPPMRSSPLPPPQRKRASTPPSP 964


>SB_13913| Best HMM Match : WH2 (HMM E-Value=8.8e-05)
          Length = 493

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 21/73 (28%), Positives = 32/73 (43%)
 Frame = +3

Query: 93  NMSKRSRTPSNNHSVSVSPKKFXXXXXXXXXXXXXXXRNIVTPPKKKQRSPKNPKNDRSS 272
           N+S  S+T  N  S++V P +                     P K  ++SPK+PK  RSS
Sbjct: 5   NLSTCSKTLLNGSSLAVEPLQVNHLDVFTISDRSFRFEFPAPPKKSPKKSPKSPKR-RSS 63

Query: 273 LTPPNSYKRTERS 311
            + P   K+  +S
Sbjct: 64  DSGPLKAKQEGQS 76


>SB_53730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 20/90 (22%), Positives = 36/90 (40%)
 Frame = +3

Query: 51  TPDSPANRSSPHSRNMSKRSRTPSNNHSVSVSPKKFXXXXXXXXXXXXXXXRNIVTPPKK 230
           +P+SP + +SP+S N      +P++ +S + SP                   +  +P   
Sbjct: 19  SPNSPNSPNSPNSPNSPNSPNSPNSPNSPN-SPNSPNSTNSPNSPNSPNSPNSPNSPNSP 77

Query: 231 KQRSPKNPKNDRSSLTPPNSYKRTERSVSP 320
              +  N  N  +S+  PNS      + SP
Sbjct: 78  NSPNSPNSPNSPNSINSPNSPNSPNSTNSP 107


>SB_12735| Best HMM Match : PT (HMM E-Value=0.36)
          Length = 1148

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 18/88 (20%), Positives = 32/88 (36%)
 Frame = +3

Query: 57   DSPANRSSPHSRNMSKRSRTPSNNHSVSVSPKKFXXXXXXXXXXXXXXXRNIVTPPKKKQ 236
            D P+N     +   S + RTP+N  S   S K+                +      K   
Sbjct: 804  DQPSNEVRTPTNQRSNKVRTPTNQRSNKRSKKEITPTNQRPNNVRTSTNQRSNKAGKNTH 863

Query: 237  RSPKNPKNDRSSLTPPNSYKRTERSVSP 320
            +S  N ++D   ++    + R E  ++P
Sbjct: 864  QSGSNMQSDTRKISDIYQHMRDEYGLTP 891


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,064,893
Number of Sequences: 59808
Number of extensions: 242503
Number of successful extensions: 1014
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)