Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_D20
         (760 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    25   0.66 
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    24   1.1  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    24   1.1  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    24   1.1  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    23   2.0  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   2.0  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    23   2.0  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   4.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   4.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   4.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   4.6  

>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 11/48 (22%), Positives = 25/48 (52%)
 Frame = +2

Query: 422 WHLTGCILVTATFPLLFIRCWGCWFNENTQYLYWWMPLYYAVLIIFFQ 565
           W +T  +++ A+     +  WG   ++   +   ++P+Y + L+IF Q
Sbjct: 139 WAVTIFLVLAASVIFFDVVVWGLSASDLGVFFKRFLPVYVSYLLIFVQ 186


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 414 LVPYLSAKTPTTGVASASTTCPRSSIAPATTALMSR 307
           + P+L+  +PTT  A AS T    +++       SR
Sbjct: 244 MYPHLNRSSPTTATAIASATVTIQNVSNTIPPFASR 279



 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -1

Query: 700 YQVNSETRHHRSHIPNRSQFGTNL 629
           YQ+N E R  R H     Q   N+
Sbjct: 288 YQMNQEYRTDRKHTQQHYQMNQNM 311


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 414 LVPYLSAKTPTTGVASASTTCPRSSIAPATTALMSR 307
           + P+L+  +PTT  A AS T    +++       SR
Sbjct: 192 MYPHLNRSSPTTATAIASATVTIQNVSNTIPPFASR 227



 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -1

Query: 700 YQVNSETRHHRSHIPNRSQFGTNL 629
           YQ+N E R  R H     Q   N+
Sbjct: 236 YQMNQEYRTDRKHTQQHYQMNQNM 259


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 414 LVPYLSAKTPTTGVASASTTCPRSSIAPATTALMSR 307
           + P+L+  +PTT  A AS T    +++       SR
Sbjct: 375 MYPHLNRSSPTTATAIASATVTIQNVSNTIPPFASR 410



 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -1

Query: 700 YQVNSETRHHRSHIPNRSQFGTNL 629
           YQ+N E R  R H     Q   N+
Sbjct: 419 YQMNQEYRTDRKHTQQHYQMNQNM 442


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 7/28 (25%), Positives = 17/28 (60%)
 Frame = +2

Query: 554 IFFQIGWAVVQISHLAMIPSITDNLQVR 637
           ++F + WA +QI  +  +  + D +Q++
Sbjct: 267 VYFTLQWAFLQILEILALAYLCDKVQLK 294


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 676 HHRSHIPNRSQFGTN 632
           HH SH+P  S F  N
Sbjct: 51  HHHSHMPPHSVFAAN 65


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 676 HHRSHIPNRSQFGTN 632
           HH SH+P  S F  N
Sbjct: 51  HHHSHMPPHSVFAAN 65


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = +2

Query: 545 VLIIFFQIGWAVVQISHLAMIPSITDNLQVRAELTSIRYMASVMSSLTVYLITWV 709
           + I    +GW    IS  + IP I    +++  L   RY   +  S+   L+ +V
Sbjct: 258 IAIFLVSLGWWENYISRHSPIPFIKKLGKIKENLEQSRYFIYMFVSVWKCLLFFV 312


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = +2

Query: 545 VLIIFFQIGWAVVQISHLAMIPSITDNLQVRAELTSIRYMASVMSSLTVYLITWV 709
           + I    +GW    IS  + IP I    +++  L   RY   +  S+   L+ +V
Sbjct: 258 IAIFLVSLGWWENYISRHSPIPFIKKLGKIKENLEQSRYFIYMFVSVWKCLLFFV 312


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = +2

Query: 545 VLIIFFQIGWAVVQISHLAMIPSITDNLQVRAELTSIRYMASVMSSLTVYLITWV 709
           + I    +GW    IS  + IP I    +++  L   RY   +  S+   L+ +V
Sbjct: 258 IAIFLVSLGWWENYISRHSPIPFIKKLGKIKENLEQSRYFIYMFVSVWKCLLFFV 312


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = +2

Query: 545 VLIIFFQIGWAVVQISHLAMIPSITDNLQVRAELTSIRYMASVMSSLTVYLITWV 709
           + I    +GW    IS  + IP I    +++  L   RY   +  S+   L+ +V
Sbjct: 258 IAIFLVSLGWWENYISRHSPIPFIKKLGKIKENLEQSRYFIYMFVSVWKCLLFFV 312


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,649
Number of Sequences: 336
Number of extensions: 4194
Number of successful extensions: 17
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20338724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)