Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_D20
(760 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 31 0.13
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ... 31 0.24
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 30 0.31
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 27 2.2
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 27 2.9
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce... 27 2.9
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho... 27 3.8
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.8
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 26 6.7
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 26 6.7
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 8.9
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch... 25 8.9
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 31.5 bits (68), Expect = 0.13
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 404 YGTKKAWHLTGCILVTATFPLLFIRCWGCWFNENTQ 511
YG++K L C++ T+T PL+ I +G +E +Q
Sbjct: 603 YGSEKPLDLKSCVIDTSTAPLIIITSYGVLLSEFSQ 638
>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 448
Score = 30.7 bits (66), Expect = 0.24
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +2
Query: 326 VAGAMLLLGQVVDALATPVVGVLADKYGTKKAWHLTGCILVTATFPLL 469
V +L + V + A+ +G LADK+ T+K L G I +T+ LL
Sbjct: 56 VISTLLAVYAVANIAASSPIGFLADKFLTRKVPMLIGLIFLTSATALL 103
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 30.3 bits (65), Expect = 0.31
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Frame = +2
Query: 518 YWWMPL-YYAVLIIFFQIGWAVVQISHLAMIPSITDNLQV-RAELTSIR--YMASVMSSL 685
YW + L Y VL I F + +V + L PS+ + L+ R + + S+ +L
Sbjct: 343 YWQLNLPIYQVLNIIFAVICPIVLLLTLIRFPSLYEQLKKPRYTVCFVVSCIFVSIFDTL 402
Query: 686 TVYLITWV 709
TV L+TW+
Sbjct: 403 TVLLLTWI 410
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/60 (23%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Frame = +2
Query: 173 VDSSASYKR--RWWRVSQNVLYGLGHVYNDLCAAMWFSYMLLFFQAVLDMRAVVAGAMLL 346
+++ +SYK +WW+ S ++L + + + + + +WF + +LFF ++ +V G+ ++
Sbjct: 189 LETYSSYKLTGQWWQ-STSILLAVS-ILSWIASKLWFRFFILFF--IIITGTIVYGSCMI 244
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 27.1 bits (57), Expect = 2.9
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 4/109 (3%)
Frame = +2
Query: 326 VAGAMLLLGQVVDALATPVVGVLADKYGTKKAWHLTGCILVTATFPLLFIRC----WGCW 493
V A+++ +V++L+T + + Y T +HL +LV LL +C G +
Sbjct: 192 VMAAVIVFHGLVNSLSTRWLDRITRFYAT---FHLI--VLVVCMICLL-AKCPKFNTGKY 245
Query: 494 FNENTQYLYWWMPLYYAVLIIFFQIGWAVVQISHLAMIPSITDNLQVRA 640
+ Q W P+ ++ L F + W + A I +N VRA
Sbjct: 246 VFTDVQASSGWHPIGFSFLFGFLSVAWCMTDYDATAHIAEEIENAAVRA 294
>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 462
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +2
Query: 323 VVAGAMLLLGQVVDALATPVVGVLADKY----GTKKAWHLTGCILVTATFPLL 469
++ A LLG + ++ P + +AD++ T+KA L+ +LV A P++
Sbjct: 49 ILVSAFALLGPMASSMVAPCLDQIADRFHIQNSTEKALILSIYLLVFAISPMI 101
>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
phospholipase C |Schizosaccharomyces pombe|chr
2|||Manual
Length = 424
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 242 HVYNDLCAAMWFSYMLLFFQAVLDMRAVVAG 334
HV C W ++LFF +L + AVV G
Sbjct: 351 HVAIAWCDPAWLKVIILFFTVMLTIAAVVNG 381
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 411 VPYLSAKTPTTGVASASTTCPRSSIAPATTALMSRT 304
VPY S TP T A+T C S+ P T+ ++ T
Sbjct: 433 VPYTS--TPVTSTPLATTNCTTSTSVPYTSTPVTST 466
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 352 TSCRCTCNPCCGSFG 396
TS R C CCG+FG
Sbjct: 445 TSVRSVCVSCCGNFG 459
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 25.8 bits (54), Expect = 6.7
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = -2
Query: 486 PQHLMNSNGNVAVTKMHPVKCHAFLVPYLSAKTPTTGVASASTTCPRSSIAPATTALMSR 307
P+H + S+ N + +HP + P + + T S ++ R P T AL +
Sbjct: 143 PKHDLYSSANASSASLHPTEQRTTSSPTIPSYANRTHTDSPTSLSHRLPNVPDTNALNTV 202
Query: 306 TA*KNSS 286
A NSS
Sbjct: 203 QA-NNSS 208
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -2
Query: 399 SAKTPTTGVASASTTCP-RSSIAPATTALMSRTA 301
S K PT VAS+S + P SS+ P ++ +S ++
Sbjct: 455 SVKQPTASVASSSVSVPSSSSVQPQSSTPISSSS 488
>SPCC4F11.04c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 513 ICTGGCHYIMRSLLYFSKLVGPWYKSHIWL*FRQSPT 623
I G C Y + S ++FSKL+ Y R+ PT
Sbjct: 300 IVAGFCLYFILSYMFFSKLLDSRYVQRFVTSKRKQPT 336
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,138,760
Number of Sequences: 5004
Number of extensions: 66161
Number of successful extensions: 186
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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