Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_D20
(760 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0475 + 3656628-3656791,3656944-3657013,3657114-3657310,365... 111 6e-25
07_03_1019 + 23337543-23337697,23338315-23338384,23338555-233387... 86 2e-17
02_05_0242 + 27121152-27121316,27121404-27121515,27121616-271217... 32 0.57
03_01_0502 - 3779551-3779562,3779863-3780012,3780129-3780172,378... 31 0.75
02_05_1302 + 35567585-35567848,35568303-35568368,35568475-355685... 30 1.7
10_08_0750 - 20293046-20293102,20293319-20293501 29 3.0
04_01_0385 - 5095410-5095445,5095595-5095796,5095905-5095979,509... 29 3.0
04_03_0930 - 20891334-20891511,20891958-20892109,20892737-208931... 29 4.0
12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,398... 29 5.3
04_04_0625 + 26682725-26683066,26683555-26683659,26683790-266839... 28 7.0
04_04_0106 + 22823781-22823878,22824887-22825325,22825578-228257... 28 9.3
>03_01_0475 +
3656628-3656791,3656944-3657013,3657114-3657310,
3657409-3657484,3657794-3657877,3658247-3658326,
3658422-3658548,3658727-3658786,3658874-3658924,
3659013-3659171,3659296-3659428,3659545-3659717
Length = 457
Score = 111 bits (267), Expect = 6e-25
Identities = 59/161 (36%), Positives = 89/161 (55%)
Frame = +2
Query: 230 YGLGHVYNDLCAAMWFSYMLLFFQAVLDMRAVVAGAMLLLGQVVDALATPVVGVLADKYG 409
YG+GH+ ND+ +A WF+Y+LLF Q + + A ++L GQV D L T + G + D++G
Sbjct: 25 YGVGHMLNDITSACWFTYLLLFLQEI-GLAPRDAAIVMLSGQVADGLMTILAGEMIDRFG 83
Query: 410 TKKAWHLTGCILVTATFPLLFIRCWGCWFNENTQYLYWWMPLYYAVLIIFFQIGWAVVQI 589
K WH+ G ILV +F +F C C YL + Y+ F IGWA Q+
Sbjct: 84 HFKLWHIGGSILVGISFSSVFGGCLLCTVLGTDSYLV--RTIGYSFFAAVFNIGWAATQV 141
Query: 590 SHLAMIPSITDNLQVRAELTSIRYMASVMSSLTVYLITWVV 712
SH++M+ +T N R L S R +++++L +Y I VV
Sbjct: 142 SHMSMVNCMTLNSTSRVALASCRNAFTMVANLGLYAIALVV 182
>07_03_1019 +
23337543-23337697,23338315-23338384,23338555-23338740,
23339006-23339080,23339161-23339240,23339357-23339483,
23340608-23340667,23341926-23341976,23342048-23342206,
23342528-23342660,23343097-23343166,23343516-23343570
Length = 406
Score = 86.2 bits (204), Expect = 2e-17
Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 8/165 (4%)
Frame = +2
Query: 230 YGLGHVYNDLCAAMWFSYMLLFFQAVLDMRAVVAGAMLLLGQVVDALATPVVGVLADKYG 409
YG GH+ ND+ ++ WF+Y+L+F + + A ++L GQ+ D AT VG L D++G
Sbjct: 22 YGSGHMLNDITSSCWFTYLLVFLTDI-GLSPSDAAVVMLSGQLADGFATIFVGELIDRFG 80
Query: 410 TKKAWHLTGCILVTATFPLLFIRCWGCWFNENTQYLYWWMPLYYAVLIIFFQIGWAVVQI 589
K WH G ILV +F +F C C + Y+ F +GWAV QI
Sbjct: 81 HFKLWHAGGSILVAISFSSVFGSCLPCKLTGTISST--METVGYSTFAAIFNVGWAVTQI 138
Query: 590 SHLA------MIPSITDNLQVRAELTSIRYMASVMSS--LTVYLI 700
++L+ +I S+ ++ V + I Y++ + S + V+LI
Sbjct: 139 ANLSLYGIALLIFSLRQSVSVIVQYRWIAYVSIALGSCFVVVFLI 183
>02_05_0242 +
27121152-27121316,27121404-27121515,27121616-27121728,
27122024-27122379,27122515-27122590,27122682-27122768,
27122885-27122965,27123060-27123092,27123335-27123388,
27123482-27123523,27123649-27123727,27123813-27123883,
27123958-27124047
Length = 452
Score = 31.9 bits (69), Expect = 0.57
Identities = 26/105 (24%), Positives = 44/105 (41%)
Frame = +2
Query: 368 LATPVVGVLADKYGTKKAWHLTGCILVTATFPLLFIRCWGCWFNENTQYLYWWMPLYYAV 547
+ TP+VG L+DKYG K L + A PL + C N + Y Y +YY V
Sbjct: 63 VVTPIVGNLSDKYGRKALMTLP---VTVAILPLFILAC-----NRSKVYFY----VYYVV 110
Query: 548 LIIFFQIGWAVVQISHLAMIPSITDNLQVRAELTSIRYMASVMSS 682
++ G H ++ + D + R + ++ V ++
Sbjct: 111 KVL---AGIFCEGSMHCLLLAYVADQVGARRRAAAFGLLSGVSAA 152
>03_01_0502 -
3779551-3779562,3779863-3780012,3780129-3780172,
3780256-3780319,3780422-3780655,3780765-3780908,
3781027-3781221,3781447-3781522,3781689-3781788,
3781955-3781988,3782076-3782160,3782226-3782290,
3782380-3782478,3782810-3782875,3785485-3785721
Length = 534
Score = 31.5 bits (68), Expect = 0.75
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +2
Query: 284 MLLFFQAVLDMRAVVAGAMLLLGQVVDALATPVVGVLAD----KYGTKKAWHLTGCILV 448
+L + L + + M L G + + P VG+ +D K+G ++ + LTGC+L+
Sbjct: 73 LLTPYVQTLGLSHALTSFMWLCGPIAGMVVQPCVGLYSDRCTSKWGRRRPYILTGCVLI 131
>02_05_1302 +
35567585-35567848,35568303-35568368,35568475-35568573,
35569028-35569061,35569147-35569246,35569738-35569813,
35569974-35570315,35570426-35570569,35570840-35571073,
35571149-35571212,35571297-35571340,35571431-35571601
Length = 545
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = +2
Query: 266 AMWFSYMLLFFQAVLDMRAVVAGAMLLLGQVVDALATPVVGVLADK----YGTKKAWHLT 433
A+ S + + Q L + +A + L G + + P VGV +DK YG ++ + L
Sbjct: 77 ALQLSLLTPYIQT-LGIDHAMASFIWLCGPITGFVVQPCVGVWSDKCRSKYGRRRPFILA 135
Query: 434 GCILVTATFP 463
GC+++ P
Sbjct: 136 GCLMICFAGP 145
>10_08_0750 - 20293046-20293102,20293319-20293501
Length = 79
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -3
Query: 293 TAACMRTTSQRRGRCKHALVRKARSD 216
TAA M+TTS R R +H L+R SD
Sbjct: 14 TAAAMKTTSDRLHRRRHQLLRPQTSD 39
>04_01_0385 -
5095410-5095445,5095595-5095796,5095905-5095979,
5096460-5096484,5097032-5097137
Length = 147
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -1
Query: 490 ATPTSNEQQRECRCY*NASSQM--PCLLSSVFISQNSHNRGCK 368
A SN+Q R CRC + ++ PC + + SQN CK
Sbjct: 48 ARSMSNDQHRSCRCVKSNCVKLYCPCFSAYGYCSQNCRCTNCK 90
>04_03_0930 -
20891334-20891511,20891958-20892109,20892737-20893169,
20893592-20893708,20894099-20894196
Length = 325
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/82 (20%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Frame = +2
Query: 479 CWGCWFNENTQYLYWWMPLYYAVLIIFF----QIGWAVVQISHLAMIPSITDNLQVRAEL 646
CW WF ++ + LY ++FF Q+ + I +++ P I L+ + ++
Sbjct: 154 CWSLWFILQSRIARKYPALYSGTALMFFLSFLQMAVVALAIDRVSLPPWI---LRTKLQI 210
Query: 647 TSIRYMASVMSSLTVYLITWVV 712
++ ++ V S + ++W V
Sbjct: 211 ITVLFVGIVGSGIGFLAMSWCV 232
>12_01_0503 -
3981603-3981730,3982858-3983023,3983057-3983139,
3983250-3983301,3983497-3983654,3983756-3985617,
3986029-3986093,3986176-3986340,3986836-3986893,
3987479-3987590,3987661-3987712,3988080-3988140,
3988220-3988377,3988705-3988787,3988897-3988945,
3989122-3989185,3990225-3990317,3990410-3990543,
3991364-3991585,3991815-3991937,3992103-3992267,
3993064-3993450
Length = 1479
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = -2
Query: 453 AVTKMHPVKCHAFLVPYLSAKTPTTGVASASTTCPRSSIAPATTALMSRTA 301
+V+KM P+ A +A PTT A+A+ PR S A LM R A
Sbjct: 828 SVSKMPPLPSPAAASAAAAAAAPTTAAAAAAAPAPRPS---ARDMLMQRPA 875
>04_04_0625 +
26682725-26683066,26683555-26683659,26683790-26683951,
26684042-26684102,26684798-26684922,26685532-26685603
Length = 288
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -2
Query: 411 VPYLSAKTPTTGV-ASASTTCPRSSIAP 331
VP +S +TP+TG+ S ST C +++ P
Sbjct: 163 VPAMSGETPSTGMKGSGSTPCKKNNTVP 190
>04_04_0106 +
22823781-22823878,22824887-22825325,22825578-22825729,
22825828-22825999
Length = 286
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/82 (19%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Frame = +2
Query: 479 CWGCWFNENTQYLYWWMPLYYAV----LIIFFQIGWAVVQISHLAMIPSITDNLQVRAEL 646
CW WF ++ + LY L+ F Q+ + + +++ P I L + ++
Sbjct: 117 CWSLWFILQSRIAKKYPALYSGTALMFLLSFLQMAAVALAVDRISLSPWI---LTTKLQI 173
Query: 647 TSIRYMASVMSSLTVYLITWVV 712
++ ++ V S + ++W V
Sbjct: 174 ITVLFVGIVGSGIAFLAMSWCV 195
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,714,331
Number of Sequences: 37544
Number of extensions: 438238
Number of successful extensions: 1154
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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