Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_D17
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    27   2.0  
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    27   2.0  
SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|c...    27   2.7  
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S...    26   4.7  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   6.2  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    25   8.1  

>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 476 VLIPPTVHPSCRLSTIHSPMVVSFIKLYVV 387
           V   PT+HP+ RL+TI   +V    K Y +
Sbjct: 406 VAASPTIHPATRLNTIQRAVVSQAKKGYTI 435


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +2

Query: 83  ELQQXENTNPHHQNIVRRIYSQLGKCISIGTIANIPLHQESPILQS 220
           EL+  + T+ +HQ  V+R+Y +  +      I+++P   E+ I +S
Sbjct: 219 ELRPRDTTDSYHQFQVQRVYDEWKE--ECALISDVPFSSETTIAES 262


>SPAC3A11.11c |||pyridoxal reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 334

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 498 GLKLLAACANSTNSSSFLQIVDYSFPHGCKF 406
           GLK L    N        +I++Y+  HGC F
Sbjct: 15  GLKSLTWTENPVPDEEAFRIMNYALSHGCSF 45


>SPAC27F1.05c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 484

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 397 YMWYCVQKCFGRHTY 353
           Y+W C+QKCF    Y
Sbjct: 109 YVWDCLQKCFDAKLY 123


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1427

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 335  TCSSSIHKILSVI*VHSAFHCKSGEIAGQVLR*FS 231
            T S +IH ILS   ++S  H      AG++L  FS
Sbjct: 930  TASENIHDILSERVLYSPLHWFEKTAAGRILNRFS 964


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
 Frame = +2

Query: 104 TNPHHQNIVRRIYSQL--GKCISIGTIANI----PLHQESPILQSSSSN*ITSTPDLLFH 265
           T+ + Q+ +  ++S +    C+ + ++  +    P    SP+ + SSSN +T  P L  H
Sbjct: 230 TSTNSQSRLAALFSSIFEDSCLEVDSVKRLLSGSPSSSSSPLKKDSSSNSLTYEPALTDH 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,275,812
Number of Sequences: 5004
Number of extensions: 45827
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)