Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_D17
         (585 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106575-2|AAQ62448.1|  506|Caenorhabditis elegans Hypothetical ...    29   3.2  
U21324-19|AAK68224.1|  407|Caenorhabditis elegans C-type lectin ...    27   7.4  
AF068713-9|AAC17800.1|  284|Caenorhabditis elegans Serpentine re...    27   9.8  

>AF106575-2|AAQ62448.1|  506|Caenorhabditis elegans Hypothetical
           protein K04F1.14b protein.
          Length = 506

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 147 NSENVSVLEQSQTYHCIKNHLFCSHHPL 230
           N  ++SVL + QTY+C +  L  +H+P+
Sbjct: 89  NITSLSVLPKLQTYYCDEEGLIIAHNPM 116


>U21324-19|AAK68224.1|  407|Caenorhabditis elegans C-type lectin
           protein 6 protein.
          Length = 407

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 201 NHLFCSHHPLTKSPQHLTCYFTTFT 275
           N+ FCS+H  T     +  YF TFT
Sbjct: 320 NNQFCSYHLSTLGSYRVALYFLTFT 344


>AF068713-9|AAC17800.1|  284|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 68 protein.
          Length = 284

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 552 LYTIILKFVCISNLCGNTGLKLLAACANSTNSSSFLQI 439
           +Y+ I   VC SN+C N  L L   C+      S L +
Sbjct: 7   IYSFITVIVCYSNICLNLILLLAIFCSKRVTFKSELSL 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,489,913
Number of Sequences: 27780
Number of extensions: 257154
Number of successful extensions: 620
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)