Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_D16
(774 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58402| Best HMM Match : No HMM Matches (HMM E-Value=.) 172 3e-43
SB_15812| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_35375| Best HMM Match : RVT_1 (HMM E-Value=0.00074) 29 3.2
SB_52381| Best HMM Match : UPF0004 (HMM E-Value=8.5) 29 4.2
SB_19572| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_14157| Best HMM Match : IncA (HMM E-Value=0.2) 29 4.2
SB_21817| Best HMM Match : Tim17 (HMM E-Value=2.4) 29 4.2
SB_3239| Best HMM Match : DUF630 (HMM E-Value=4.8) 28 7.3
SB_33032| Best HMM Match : Prothymosin (HMM E-Value=0.78) 28 9.6
>SB_58402| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 172 bits (418), Expect = 3e-43
Identities = 84/192 (43%), Positives = 121/192 (63%), Gaps = 10/192 (5%)
Frame = +3
Query: 228 LELAQAEALDKDICLLVDEKDNFIGTATKRECH-KVGPDGDVLLHRAFSVFLFNKRGDMF 404
L++ Q L++ C+LVD DN G ATKRECH K LLHRAFSVFLFN +GD+
Sbjct: 39 LDVTQRRLLEEQ-CILVDTDDNVQGCATKRECHLKENIVEQGLLHRAFSVFLFNSKGDLL 97
Query: 405 LQRRSSQKVTYPDYYTNACCSHPLYIDEKPEE-----IITAARRRMNHELGIPLDQLDPE 569
+Q+R+ K+T+P +TN+CCSHPLY++ + EE + AA+RR+ +ELGIP ++ +
Sbjct: 98 IQQRADTKITFPGLFTNSCCSHPLYVESEMEENECLGVKRAAKRRLEYELGIPQKEVTLD 157
Query: 570 LFTFMTRVHYHDPGDGVWGEHEIDHILFFQSDVKVKPNSDEISEYCFVPKAXFNSFLPTL 749
F F+TR+HY D +WGEHEID++LF Q DV + PN +E+ ++ + L
Sbjct: 158 DFQFLTRIHYKASSDKIWGEHEIDYVLFIQKDVTLAPNLNEVQLCEYMSQGQVRRLLSDS 217
Query: 750 ----EGPITPWF 773
+ +TPWF
Sbjct: 218 NQDDKVKVTPWF 229
>SB_15812| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 31.1 bits (67), Expect = 1.0
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = -2
Query: 653 EQYVVDLVFAPHSITRVVIVHAGHERKQFRVQLI*W--DSQFMVHPTSGCRYDFLGLLIY 480
+ +V+ L F SI ++ G F ++ W +S + V P C + LG ++
Sbjct: 70 QSFVMGLFFFVQSIGSLL----GAALYSFAGHVLHWTTESFYTVGPHLDCYFFLLGAIML 125
Query: 479 VQWMAAASICVVIGICYFLA*SPLKE 402
V W+ +C+ G+ +F P E
Sbjct: 126 VSWLVFVVVCIRSGLPFFQRSRPWAE 151
>SB_35375| Best HMM Match : RVT_1 (HMM E-Value=0.00074)
Length = 996
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 98 FSKIHTYENVGQKANKITVEHPKSREKIFGF 190
F +IH G + KIT HPK++ ++ GF
Sbjct: 760 FHRIHRVHREGFRHKKITPRHPKAQGQVEGF 790
>SB_52381| Best HMM Match : UPF0004 (HMM E-Value=8.5)
Length = 508
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 709 KQYSEISSEFGLTLTSLWKNSMWSISCSPHTP 614
+Q ++ E+G T S + S W S PH+P
Sbjct: 306 EQSEDVEEEYGATHASPYLESTWEWSVQPHSP 337
>SB_19572| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 823
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 709 KQYSEISSEFGLTLTSLWKNSMWSISCSPHTP 614
+Q ++ E+G T S + S W S PH+P
Sbjct: 370 EQSEDVEEEYGATHASPYLESTWEWSVQPHSP 401
>SB_14157| Best HMM Match : IncA (HMM E-Value=0.2)
Length = 556
Score = 29.1 bits (62), Expect = 4.2
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Frame = +3
Query: 195 PVKPATLDKDGLELAQAEALDKDICLLVDEKDNFIG-TATKRECHK---VGPDGDVLLHR 362
P TL K + +D+ CL +DE N + T+R H+ GPD + +
Sbjct: 133 PTLKVTLPKIEAIYIFCDIVDRSQCLALDEPSNVLACLETRRRPHEKVVYGPDTPICVAA 192
Query: 363 AFSVFLFNKR 392
+FS F+ + R
Sbjct: 193 SFSEFVSSIR 202
>SB_21817| Best HMM Match : Tim17 (HMM E-Value=2.4)
Length = 293
Score = 29.1 bits (62), Expect = 4.2
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Frame = +3
Query: 195 PVKPATLDKDGLELAQAEALDKDICLLVDEKDNFIG-TATKRECHK---VGPDGDVLLHR 362
P TL K + +D+ CL +DE N + T+R H+ GPD + +
Sbjct: 75 PTLKVTLPKIEAIYIFCDIVDRSQCLALDEPSNVLACLETRRRPHEKVVYGPDTPICVAA 134
Query: 363 AFSVFLFNKR 392
+FS F+ + R
Sbjct: 135 SFSEFVSSIR 144
>SB_3239| Best HMM Match : DUF630 (HMM E-Value=4.8)
Length = 343
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -3
Query: 733 ELNXALGTKQYSEISSEFGLTLTSLWKNSMWSISCSPHTPSP 608
ELN +L ++ +I E GLT N S S S H P+P
Sbjct: 19 ELNASLTDQELRDIRQELGLTDIDPSANLFSSGSLSNHVPTP 60
>SB_33032| Best HMM Match : Prothymosin (HMM E-Value=0.78)
Length = 508
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +3
Query: 375 FLFNKRGDMFLQRRSSQKVTYPDYYTNACCSHPLYIDEKPEEIITAARRRMNHELGIPLD 554
F ++R + SS++V + N CC+H + E P+E + + +N E + +
Sbjct: 380 FAHDRRKEKLYVLLSSREVLVFESDNNPCCAHQSWRAECPDEGVCSI-ALLNSEFALTEE 438
Query: 555 QLDPE 569
LD E
Sbjct: 439 DLDLE 443
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,635,773
Number of Sequences: 59808
Number of extensions: 528445
Number of successful extensions: 1175
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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