Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_D15
         (597 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       26   0.21 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   2.6  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    22   4.5  
AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochr...    21   6.0  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 26.2 bits (55), Expect = 0.21
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -2

Query: 452 CLMSGCECYKKV*FFLH 402
           C M G EC  KV FFLH
Sbjct: 501 CNMCGVECSDKVSFFLH 517


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 258 GFQIVLLKDQVSLIKLSPSQHML 190
           GF  +L +DQ++L+K   S+ M+
Sbjct: 378 GFDKLLREDQIALLKACSSEVMM 400


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 529 LSNVLPRKKKSQLPPNIHMLSAACECV 449
           ++N+LP  K+    PN H+ SA    +
Sbjct: 325 MNNILPCVKELVADPNQHVKSALASVI 351


>AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q3 protein.
          Length = 143

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 167 ISTRLGNTSMCCDGLSFIKDT 229
           IS +LG   + C+GL   K T
Sbjct: 82  ISRKLGEDFVTCNGLKLPKST 102


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,135
Number of Sequences: 336
Number of extensions: 2382
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)