Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_D15
         (597 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25505| Best HMM Match : zf-RanBP (HMM E-Value=0.0041)               29   2.9  
SB_35208| Best HMM Match : EGF_CA (HMM E-Value=1.2e-09)                27   8.7  

>SB_25505| Best HMM Match : zf-RanBP (HMM E-Value=0.0041)
          Length = 401

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 532 HLSNVLPRKKKSQLPPNIHMLSAACECV*CQDV 434
           H S ++PR  +  +P   H+L+AA +C  C+ V
Sbjct: 239 HRSQLVPRGSRCSVPNCQHLLNAALQCKICKRV 271


>SB_35208| Best HMM Match : EGF_CA (HMM E-Value=1.2e-09)
          Length = 598

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -3

Query: 547 KMINNHLSNVLPRKKKSQLPPNIHMLSAACEC-V*CQDVNAIKRSDFFCIRRMLCCL*G* 371
           K +  H +  +PRKKKS +  +  +  A+ EC +   DV+       +C  +   C+   
Sbjct: 414 KTLMGHTNAFVPRKKKSWMDSSERISFASSECRIIIIDVDECASGHHYCYWKSSTCVNTE 473

Query: 370 PTIY 359
           P  Y
Sbjct: 474 PGYY 477


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,447,664
Number of Sequences: 59808
Number of extensions: 277370
Number of successful extensions: 701
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)