Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_D14
         (842 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53083| Best HMM Match : No HMM Matches (HMM E-Value=.)             114   7e-26
SB_31599| Best HMM Match : No HMM Matches (HMM E-Value=.)             108   6e-24
SB_23802| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   1e-07
SB_4318| Best HMM Match : Ligase_CoA (HMM E-Value=0)                   42   5e-04
SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)              31   1.5  
SB_57025| Best HMM Match : Fascin (HMM E-Value=0)                      31   1.5  
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_215| Best HMM Match : ALG3 (HMM E-Value=0.18)                       30   2.7  
SB_55610| Best HMM Match : DUF361 (HMM E-Value=4.8)                    29   4.7  
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)        29   6.2  
SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.2  

>SB_53083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 291

 Score =  114 bits (275), Expect = 7e-26
 Identities = 73/172 (42%), Positives = 96/172 (55%), Gaps = 6/172 (3%)
 Frame = +2

Query: 86  GNXLLTASSANKFPSKQQVRHLNVHEYISYTLLRDHGIPVPKFNVAKTKDEAIKFATELN 265
           G  L      N     Q  R+L+VHE+ S  +L+D GI  PK  VA+T ++A + AT L 
Sbjct: 20  GKLLARVLGPNVIAQHQPRRNLSVHEHHSMKILQDAGILTPKGGVARTAEQAYEIATVLG 79

Query: 266 TK----DIVLKAQVLAGGRGKGTFKNGLKGGVRMVNTPEVAGDIAGKMLKQLLVTKQTGA 433
                 D+V+KAQVLAGGRGKG F+ GLKGGVR+V + + A ++A +M+ + L TKQTG 
Sbjct: 80  ESEVEGDMVVKAQVLAGGRGKGKFEGGLKGGVRIVFSADEAKEVASRMIGKKLFTKQTGE 139

Query: 434 AGRICNMVMVTERKFPRREYYVAIMMERSFNG--PVIIASSQGGVNIEDVAA 583
            GRICN V V    F      +A M     +G  P       GG +IE V A
Sbjct: 140 LGRICNEVFV----FNGAGLAMATMDIIQLHGGEPANFLDIGGGASIEQVEA 187


>SB_31599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score =  108 bits (259), Expect = 6e-24
 Identities = 54/115 (46%), Positives = 73/115 (63%)
 Frame = +2

Query: 257 ELNTKDIVLKAQVLAGGRGKGTFKNGLKGGVRMVNTPEVAGDIAGKMLKQLLVTKQTGAA 436
           +++  + V+KAQ+LAGGRGKGTF +GL GGV +    +  G    KM    L TKQT   
Sbjct: 30  QVDAAEYVIKAQILAGGRGKGTFDSGLNGGVHLTKLADEVGYFTAKMFGYRLKTKQTPPE 89

Query: 437 GRICNMVMVTERKFPRREYYVAIMMERSFNGPVIIASSQGGVNIEDVAAENPDAI 601
           G +   VMV E     RE Y+AI+M+R F GPVI+AS +GG++IE+VA   P+ I
Sbjct: 90  GVMVTRVMVAEAYDIERETYLAILMDREFMGPVIVASPKGGMDIEEVAKTTPEYI 144


>SB_23802| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 178

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 22/50 (44%), Positives = 35/50 (70%)
 Frame = +2

Query: 692 EAHGMIKKMYDLFLKKDALLIEVNPYAEXALTGQFFCLDAKFXFDDNAEF 841
           +A   + +MYD+F+ +DA+L+E+NP +E  L G+  C+D K  FDDNA +
Sbjct: 23  QAADWMMRMYDIFMSRDAVLLEINPMSED-LLGRVVCMDCKLLFDDNASY 71


>SB_4318| Best HMM Match : Ligase_CoA (HMM E-Value=0)
          Length = 229

 Score = 42.3 bits (95), Expect = 5e-04
 Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 17/62 (27%)
 Frame = +2

Query: 707 IKKMYDLFLKKDALLIEVNPYAEXA-LTGQFF----------------CLDAKFXFDDNA 835
           IK++YD+FLK DA  +E+NP+ E     G+ F                C DAKF FDDNA
Sbjct: 5   IKRLYDVFLKVDATQVEINPFGETPDGKGKLFRSWKAQPFQDSFNRIVCFDAKFNFDDNA 64

Query: 836 EF 841
           ++
Sbjct: 65  KY 66


>SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)
          Length = 2007

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 470 RKFPRREYYVAIM-MERSFNGPVIIASSQGGVNIEDVAAENPD 595
           R+F + E Y+A    ERS+  P I+ +S G    E+   + PD
Sbjct: 330 RRFEKSEPYMAWQGTERSYGSPAIVQASYGSTPYENENGQKPD 372


>SB_57025| Best HMM Match : Fascin (HMM E-Value=0)
          Length = 504

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = -3

Query: 381 SPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMSLVLSSVANLIASSL 229
           S A +   T   PP    L  P+PR P  TCA   +  +  +V+   A SL
Sbjct: 162 SEAETATKTETPPPWLRLLPAPYPRTPTTTCALVPVGTINITVSENNARSL 212


>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1229

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 36/114 (31%), Positives = 49/114 (42%), Gaps = 5/114 (4%)
 Frame = -3

Query: 480 GNFLSVTMTMLQIRPAAPVCFVTRSCLSIFP--AISPATSGVLTIRTPPLS-PFLKVPFP 310
           GNF S T  ++          V  S  SI P   I+      +T+  P  S P+     P
Sbjct: 55  GNFTSATSVVVDSTTPNATRLVPSSSASISPNVTINMTREANITMILPSTSVPYNTTLIP 114

Query: 309 RPPARTCAFRTMSLVLSSVANL--IASSLVLATLNLGTGIPWSRSRV*LMYSCT 154
            P A + A  TMS   S VAN+  + SS+ L   +L T +  S S   L Y+ T
Sbjct: 115 APNATSTAATTMS--PSYVANMTTLDSSVSLTRSSLSTTLIPSISTSILPYNTT 166


>SB_215| Best HMM Match : ALG3 (HMM E-Value=0.18)
          Length = 521

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = -3

Query: 417 VTRS-CLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMSLVLSSVANLI 241
           VTRS C S FP  +P+T  V T  +  ++        RPPA+  + R  +  L++ A  +
Sbjct: 201 VTRSDCCSAFPIRTPSTCSVCTWHSSNIA--------RPPAQPSSLRERTRTLATTATHM 252

Query: 240 ASSLVLATLNLGTG 199
            S +    L++  G
Sbjct: 253 MSYIACTKLHVKRG 266


>SB_55610| Best HMM Match : DUF361 (HMM E-Value=4.8)
          Length = 158

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 36/102 (35%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
 Frame = -3

Query: 435 AAPVCFVTRSCLSIFPAISPATSGVLTIR-TPPLSPFLKVPFPRPPARTCAFRTMSLV-L 262
           AA V FV+R C S+     P    V   R +  L P  K      P        +  V L
Sbjct: 50  AAVVSFVSRCCRSV--KCDPDVKLVSLQRISGGLGPKHKFVMKSAPVGDGIASCIECVTL 107

Query: 261 SSVANLIASSLVLATLNLGTGIPWSRSRV*LMYSCTFKWRTC 136
            SVAN     L LAT + G  I  + SR   MYS  FKW  C
Sbjct: 108 KSVAN----GLYLATTDTGA-ISMTTSRK--MYSAFFKWEVC 142


>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
          Length = 1960

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 36/114 (31%), Positives = 48/114 (42%), Gaps = 5/114 (4%)
 Frame = -3

Query: 480 GNFLSVTMTMLQIRPAAPVCFVTRSCLSIFP--AISPATSGVLTIRTPPLS-PFLKVPFP 310
           GNF S T  ++          V  S  SI P   I+       T+  P  S P+     P
Sbjct: 55  GNFTSATSVVVDSTTPNATRLVPSSSASISPNVTINMTREANSTMILPSTSVPYNTTLIP 114

Query: 309 RPPARTCAFRTMSLVLSSVANL--IASSLVLATLNLGTGIPWSRSRV*LMYSCT 154
            P A + A  TMS   S VAN+  + SS+ L   +L T +  S S   L Y+ T
Sbjct: 115 APNATSTAATTMS--PSYVANMTTLDSSVSLTRSSLSTTLIPSISTSILPYNTT 166


>SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1001

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 20/56 (35%), Positives = 24/56 (42%)
 Frame = +1

Query: 385 SRKDA*TTPSNKTNRGSRTNLQHGHGHREEVPTQGILRGNYDGTQFQWSSHHCFIS 552
           SRK     PS  T R       HG G  +++P + I R N     F  SS  CF S
Sbjct: 719 SRKRRLAVPSTPTKR-------HGSGRFKDLPPRKIRRDNSSHDSFSSSSSCCFSS 767


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,493,646
Number of Sequences: 59808
Number of extensions: 542943
Number of successful extensions: 1333
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1331
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)