Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_D14
(842 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68004-1|CAA91981.1| 435|Caenorhabditis elegans Hypothetical pr... 219 3e-57
U41557-3|AAA83304.1| 415|Caenorhabditis elegans Hypothetical pr... 180 1e-45
Z74040-3|CAB54276.3| 246|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z74040-2|CAA98513.1| 287|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z74040-1|CAA98514.2| 340|Caenorhabditis elegans Hypothetical pr... 28 7.2
AY204202-1|AAO39203.1| 339|Caenorhabditis elegans nuclear recep... 28 7.2
AY204201-1|AAO39202.1| 409|Caenorhabditis elegans nuclear recep... 28 7.2
AY204200-1|AAO39201.1| 304|Caenorhabditis elegans nuclear recep... 28 7.2
AF408754-1|AAO27833.1| 418|Caenorhabditis elegans nuclear recep... 28 7.2
AC084155-11|AAQ91893.1| 304|Caenorhabditis elegans Nuclear horm... 28 7.2
AC084155-10|AAG23368.3| 418|Caenorhabditis elegans Nuclear horm... 28 7.2
Z81079-5|CAB03082.2| 505|Caenorhabditis elegans Hypothetical pr... 28 9.5
AJ238443-1|CAB41469.1| 454|Caenorhabditis elegans TBP-like fact... 28 9.5
AF228692-1|AAF59926.1| 505|Caenorhabditis elegans TBP-like fact... 28 9.5
>Z68004-1|CAA91981.1| 435|Caenorhabditis elegans Hypothetical
protein F47B10.1 protein.
Length = 435
Score = 219 bits (534), Expect = 3e-57
Identities = 111/234 (47%), Positives = 153/234 (65%), Gaps = 1/234 (0%)
Frame = +2
Query: 143 RHLNVHEYISYTLLRDHGIPVPKFNVAKTKDEAIKFATELNTKDIVLKAQVLAGGRGKGT 322
R L +HE+ +L+++ I VP F VA+ + A A + KD V+KAQVLAGGRGKG
Sbjct: 22 RTLMLHEHHGMKILQNYEIKVPPFGVAQDAETAFSEAKRIGGKDYVVKAQVLAGGRGKGR 81
Query: 323 FKNGLKGGVRMVNTPEVAGDIAGKMLKQLLVTKQTGAAGRICNMVMVTERKFPRREYYVA 502
F +GL+GGV++V TP+ AG M+ L+TKQT G+ C VMV +R F RREYY +
Sbjct: 82 FSSGLQGGVQIVFTPDEVKQKAGMMIGANLITKQTDHRGKKCEEVMVCKRLFTRREYYFS 141
Query: 503 IMMERSFNGPVIIASSQGGVNIEDVAAENPDAITYEPIDIVSGITDDQICRVIEKIGL-Q 679
I ++R+ NGP++IASSQGGVNIE+VAA NPDAI PID+ GIT + + K+G +
Sbjct: 142 ITLDRNTNGPIVIASSQGGVNIEEVAATNPDAIVKMPIDVNVGITKELAHEIAVKMGFSK 201
Query: 680 EFATEAHGMIKKMYDLFLKKDALLIEVNPYAEXALTGQFFCLDAKFXFDDNAEF 841
+ +A +I+K+Y +F DA L+E+NP AE + G +C+D K D NAEF
Sbjct: 202 DCEQQASEIIEKLYQMFKGSDATLVEINPMAED-VNGDVYCMDCKLLLDSNAEF 254
>U41557-3|AAA83304.1| 415|Caenorhabditis elegans Hypothetical
protein C50F7.4 protein.
Length = 415
Score = 180 bits (438), Expect = 1e-45
Identities = 101/252 (40%), Positives = 148/252 (58%), Gaps = 3/252 (1%)
Frame = +2
Query: 95 LLTASSANKFPSKQQVRHLNVHEYISYTLLRDHGIPVPKFNVAKTKDEAIKFATELNTKD 274
L A + +K K Q R LN+ E+ S +L HG V F VA + EA + +
Sbjct: 2 LRAAGNLSKSMMKSQRRFLNLQEFQSKEILEKHGCSVQNFVVASNRKEAEEKWMSFGDHE 61
Query: 275 IVLKAQVLAGGRGKGTFKNGLKG--GVRMVNTPEVAGDIAGKMLKQLLVTKQTGAAGRIC 448
V+KAQ+LAGGRGKG F NG KG GV + + A + +M+ + LVTKQT + G
Sbjct: 62 YVVKAQILAGGRGKGKFINGTKGIGGVFITKEKDAALEAIDEMIGKRLVTKQTTSEGVRV 121
Query: 449 NMVMVTERKFPRREYYVAIMMERSFNGPVIIASSQGGVNIEDVAAENPDAITYEPIDIVS 628
+ VM+ E +RE Y+A++M+R NGPV++AS GG++IE VA + P+ I PIDI
Sbjct: 122 DKVMIAEGVDIKRETYLAVLMDRESNGPVVVASPDGGMDIEAVAEKTPERIFKTPIDIQM 181
Query: 629 GITDDQICRVIEKIGLQ-EFATEAHGMIKKMYDLFLKKDALLIEVNPYAEXALTGQFFCL 805
G+T+ Q ++ + + + + A IK++YDLF+ DA +E+NP E A G+ FC+
Sbjct: 182 GMTEGQSLKIAKDLQFEGKLIGVAAQEIKRLYDLFIAVDATQVEINPLVETA-DGRVFCV 240
Query: 806 DAKFXFDDNAEF 841
DAK FDD+A +
Sbjct: 241 DAKMNFDDSAAY 252
>Z74040-3|CAB54276.3| 246|Caenorhabditis elegans Hypothetical
protein K10D6.2c protein.
Length = 246
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -2
Query: 664 FDNTANLIISNTRNNIN 614
FDN+A L+I NT NNI+
Sbjct: 79 FDNSAELVIQNTLNNID 95
>Z74040-2|CAA98513.1| 287|Caenorhabditis elegans Hypothetical
protein K10D6.2b protein.
Length = 287
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -2
Query: 664 FDNTANLIISNTRNNIN 614
FDN+A L+I NT NNI+
Sbjct: 79 FDNSAELVIQNTLNNID 95
>Z74040-1|CAA98514.2| 340|Caenorhabditis elegans Hypothetical
protein K10D6.2a protein.
Length = 340
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -2
Query: 664 FDNTANLIISNTRNNIN 614
FDN+A L+I NT NNI+
Sbjct: 79 FDNSAELVIQNTLNNID 95
>AY204202-1|AAO39203.1| 339|Caenorhabditis elegans nuclear receptor
NHR-114 protein.
Length = 339
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 414 TRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 271
T C S A +P + L + PP+SP L P P R C +T++
Sbjct: 108 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 154
>AY204201-1|AAO39202.1| 409|Caenorhabditis elegans nuclear receptor
NHR-114 protein.
Length = 409
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 414 TRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 271
T C S A +P + L + PP+SP L P P R C +T++
Sbjct: 99 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 145
>AY204200-1|AAO39201.1| 304|Caenorhabditis elegans nuclear receptor
NHR-114 protein.
Length = 304
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 414 TRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 271
T C S A +P + L + PP+SP L P P R C +T++
Sbjct: 108 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 154
>AF408754-1|AAO27833.1| 418|Caenorhabditis elegans nuclear receptor
protein protein.
Length = 418
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 414 TRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 271
T C S A +P + L + PP+SP L P P R C +T++
Sbjct: 108 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 154
>AC084155-11|AAQ91893.1| 304|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 114, isoform b protein.
Length = 304
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 414 TRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 271
T C S A +P + L + PP+SP L P P R C +T++
Sbjct: 108 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 154
>AC084155-10|AAG23368.3| 418|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 114, isoform a protein.
Length = 418
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 414 TRSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 271
T C S A +P + L + PP+SP L P P R C +T++
Sbjct: 108 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 154
>Z81079-5|CAB03082.2| 505|Caenorhabditis elegans Hypothetical
protein F39H11.2 protein.
Length = 505
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 557 GVNIEDVAAENPDAITYEP 613
G+ IE+VAA+ P TYEP
Sbjct: 372 GIKIEEVAAKYPSESTYEP 390
>AJ238443-1|CAB41469.1| 454|Caenorhabditis elegans TBP-like factor
protein.
Length = 454
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 557 GVNIEDVAAENPDAITYEP 613
G+ IE+VAA+ P TYEP
Sbjct: 372 GIKIEEVAAKYPSESTYEP 390
>AF228692-1|AAF59926.1| 505|Caenorhabditis elegans TBP-like factor
protein.
Length = 505
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 557 GVNIEDVAAENPDAITYEP 613
G+ IE+VAA+ P TYEP
Sbjct: 372 GIKIEEVAAKYPSESTYEP 390
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,774,727
Number of Sequences: 27780
Number of extensions: 404673
Number of successful extensions: 1062
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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