Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_D09
         (434 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1064| Best HMM Match : Vicilin_N (HMM E-Value=3.3)                  29   1.3  
SB_10192| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_6056| Best HMM Match : zf-C3HC4 (HMM E-Value=2.4e-14)               27   6.7  
SB_9403| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.7  

>SB_1064| Best HMM Match : Vicilin_N (HMM E-Value=3.3)
          Length = 313

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
 Frame = -2

Query: 262 RGQRRVSDGNSSSSRG--VWRYHGGY*AGCINVVQA-RVWEKLRSWXR------RCLRVW 110
           +GQRR       S R   VWR   G   G  +  +A R+W   R + +      R  R+W
Sbjct: 4   KGQRRFGQDREDSDRAKRVWRGQRGLGQGREDSDRAKRIWRGQRGFGQGKEDLERTERIW 63

Query: 109 SGQRHGQXSEENDEFVEHVVCXEEG 35
           +GQR      E+ +  E +   + G
Sbjct: 64  TGQRGFVQEREDLDRTERIWTGQRG 88


>SB_10192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 373

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
 Frame = -2

Query: 283 LTNVISCRGQRRVS----DGNSSSSRGVWRYHGGY*AGCINVV 167
           L  ++S +G+ RV     DG ++++R V+ Y+G +  GC +V+
Sbjct: 330 LQTILSVKGEFRVGPYKVDGYAAATRTVYEYYGCFYHGCPSVL 372


>SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1050

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -2

Query: 175 NVVQARVWEKLRSWXRRCLRVWSGQRHGQXS-EENDEFVEHVVCXEEGAR 29
           N   A  +  L +  +RC+  W GQ        +NDEF  +  C +EG +
Sbjct: 149 NSTSAGYYTCLSTGSKRCISGWYGQNCTTYCVPQNDEFANY-TCSDEGIK 197


>SB_6056| Best HMM Match : zf-C3HC4 (HMM E-Value=2.4e-14)
          Length = 270

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 269 YYVR*KKKISRHLSK*FLCFSGLCIKSQPY 358
           Y V  K K  +  +K F+C SGLC++ Q Y
Sbjct: 202 YKVEMKPKGLKPPTKRFVCASGLCLQRQDY 231


>SB_9403| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 160 RVWEKLRSWXRRCLRVWSGQR 98
           R+W K  SW + C R W  ++
Sbjct: 393 RLWPKCASWLKTCSRRWPSEK 413


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,972,717
Number of Sequences: 59808
Number of extensions: 129237
Number of successful extensions: 296
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)