Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_D08
         (725 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.95 
SB_59382| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)                     28   8.9  
SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_42826| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6119

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
 Frame = +1

Query: 205  FIKDLINKPTPIDVWLQGTIEQTVGRDILIISDTFGRA-KITKCETADGVIDKNSIKKGT 381
            F+  +I +P P   WL+G    T G    I+SD  G+  +IT C   D         +G 
Sbjct: 4361 FVCRVIGRPDPTYEWLRGDKPITDGGRYTIMSDDEGQTLEITDCTVED---------EGL 4411

Query: 382  YCCIIGTAVKTKGVPEVQAYKFIDLSSQPEMKSSWEIEVNEANL 513
            Y C+   +  + G     A   ++ S +P  K+  ++ +  A++
Sbjct: 4412 YKCV---STNSSGTDTTTARLTVEASRRPISKNIEKLLIKAASM 4452


>SB_59382| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 241

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 160 LQYKPINMSICPRKYFIKDLINKPTPIDVWLQGTIEQT 273
           LQYK  +    P ++F+K L   P P  V L+  +E T
Sbjct: 146 LQYKYADFKSEPHQFFVKSLRQPPPPPSVALETYLELT 183


>SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4247

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 127 LTQYAAYLPFALQYKPINMSICPRKYFIKDLINKPT 234
           L QY+AY+  AL    ++++  P K   KD I K T
Sbjct: 434 LIQYSAYIFIALLISSVSLATTPAKSHSKDNIGKIT 469


>SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 537

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 460 SQPEMKSSWEIEVNEANLFLEGKLIPNIED 549
           ++ E+   WE+ +NEA  F E + +   ED
Sbjct: 36  AEGEIPEHWEVLINEAKSFYEDEFVSTAED 65


>SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 693

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +1

Query: 361 NSIKKGTYCCIIGTAVKTKGVPEVQAYKFIDLSSQPEMKSSWEIEVNEANLFLEGKL-IP 537
           NS+K+   C +  T   TK + EVQ  K I L   P +    +   ++A + L   + I 
Sbjct: 473 NSLKRSRTCTVGATPGVTKSMQEVQLDKHIKLLDSPGI--VMDTGDSDAAIILRNCVKIE 530

Query: 538 NIED 549
           NIED
Sbjct: 531 NIED 534


>SB_42826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 460 SQPEMKSSWEIEVNEANLFLEGKLIPNIED 549
           ++ E+   WE+ +NEA  F E + +   ED
Sbjct: 79  AEGEIPEHWEVLINEAKSFYEDEFVSTAED 108


>SB_15566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1265

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 21/70 (30%), Positives = 30/70 (42%)
 Frame = +1

Query: 307 FGRAKITKCETADGVIDKNSIKKGTYCCIIGTAVKTKGVPEVQAYKFIDLSSQPEMKSSW 486
           FG A + +C   D V      K G Y  +    +KTKG PE    K ++     EM++  
Sbjct: 178 FGLAPVQRCIYKDLVALLTPEKHGGY--LSSKELKTKGEPEFLQDKLLEGGQMGEMRNG- 234

Query: 487 EIEVNEANLF 516
            I   E  +F
Sbjct: 235 -INYREVRIF 243


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,693,407
Number of Sequences: 59808
Number of extensions: 410225
Number of successful extensions: 822
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)