Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_D07
(659 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 73 4e-14
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 60 2e-10
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 27 1.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.2
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 27 3.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 5.5
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 26 5.5
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 26 5.5
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 25 7.3
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 25 7.3
SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Sch... 25 7.3
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 25 7.3
SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|... 25 9.7
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 25 9.7
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 25 9.7
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 25 9.7
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 72.9 bits (171), Expect = 4e-14
Identities = 33/71 (46%), Positives = 48/71 (67%)
Frame = +3
Query: 426 LKENGIQASKDIKLLLLGAGESGKSTIVKQMKIIHESGFTNEDFKQYRPVVYSNTIQSLV 605
+K N DIK+LLLGAG+SGK+TI+KQM++++ GF+ KQYR +++ N I SL
Sbjct: 64 VKGNSTSGGNDIKVLLLGAGDSGKTTIMKQMRLLYSPGFSQVVRKQYRVMIFENIISSLC 123
Query: 606 AILRAMPNLGI 638
+L AM N +
Sbjct: 124 LLLEAMDNSNV 134
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 60.5 bits (140), Expect = 2e-10
Identities = 28/75 (37%), Positives = 49/75 (65%)
Frame = +3
Query: 414 IDKNLKENGIQASKDIKLLLLGAGESGKSTIVKQMKIIHESGFTNEDFKQYRPVVYSNTI 593
I+K ++ + K K+LLLGA +SGKSTI KQ+KI++++GF+ E+ + PV+ N +
Sbjct: 20 IEKQIENASKKDKKIYKVLLLGASDSGKSTISKQIKILNKNGFSQEEIMTFIPVIRRNLL 79
Query: 594 QSLVAILRAMPNLGI 638
+S +++ + GI
Sbjct: 80 ESAKTLVKIIVQKGI 94
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 27.5 bits (58), Expect = 1.8
Identities = 9/26 (34%), Positives = 22/26 (84%)
Frame = +3
Query: 447 ASKDIKLLLLGAGESGKSTIVKQMKI 524
++K++++L+LG +GK+TI+ ++K+
Sbjct: 18 SNKEMRILMLGLDAAGKTTILYKLKL 43
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = -2
Query: 364 PISAVLPMLWPQAA--PTPEPGALSPISQHALYTRPVAPALPEPP 236
P S + P+ P A P P P P+ + ++ PV P PP
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 26.6 bits (56), Expect = 3.2
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +3
Query: 411 LIDKNLKENGIQASKD-IKLLLL-GAGESGKSTIVKQMKI 524
L DK+ N I S D ++ LL+ G GKS+ VKQ+ +
Sbjct: 746 LSDKSFVPNHIHLSSDGVRCLLITGPNMGGKSSFVKQLAL 785
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = -2
Query: 349 LPMLWPQAAPTPEPGALS-PISQHALYTRPVAPALPEPP 236
LPM P A P P ++ P+ P+ PA P PP
Sbjct: 439 LPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/20 (45%), Positives = 17/20 (85%)
Frame = +3
Query: 453 KDIKLLLLGAGESGKSTIVK 512
+++++LLLG +GK+TI+K
Sbjct: 15 REVRVLLLGLDNAGKTTILK 34
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = -2
Query: 322 PTPEPGALSPISQHALYTRPVAPALPEPPY--TILAPN 215
P P PG + A T P AP +P P+ TI A N
Sbjct: 290 PPPPPGMVMASPSPAAATIPGAPVMPNIPFYQTINAQN 327
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 441 IQASKDIKLLLLGAGESGKSTIVKQMKIIHESGFTNE 551
I I + +G GKST+VK + +H F NE
Sbjct: 18 ISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNE 54
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 478 VLANRARVL*SNR*KLSMKVDSQMKTSNSTGPWS 579
+LAN R++ SN K+ D Q + S GPW+
Sbjct: 1 MLANALRLV-SNSKKIKYDYDIQKENSVQVGPWT 33
>SPAC3A12.16c |tim17||TIM23 translocase complex subunit
Tim17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 164
Score = 25.4 bits (53), Expect = 7.3
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 283 HALYTRPVAPALPEPP 236
+A Y RPVAP +P+ P
Sbjct: 137 NAEYNRPVAPVIPDAP 152
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 25.4 bits (53), Expect = 7.3
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Frame = -2
Query: 358 SAVLPMLWPQAAPTPEPGALSPISQHALYTRPVAPALPEPPYT--ILAPNTRT 206
+A P+ P A P P A + RP APA+ P T AP T T
Sbjct: 995 AATKPVSMPAAKSKPAPMANPVSTAQQTQNRPPAPAMQARPNTTQAAAPVTST 1047
>SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 491
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -1
Query: 434 LFQVLIDQFASSSRCTLFGRLGAPHIGSS 348
++Q+L D+FA CT G ++G +
Sbjct: 29 IYQILTDRFALDDHCTTAPSTGRMYLGGT 57
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Frame = -2
Query: 346 PMLWPQAAPTPEPGALSPISQHALYTRPV----APALPEPPYT 230
P + PQ P P A +P +H PV +P++P P T
Sbjct: 721 PAIKPQVTPAPPTPAPTPAVKHHPPPPPVRSSISPSMPPAPLT 763
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 25.0 bits (52), Expect = 9.7
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = +3
Query: 426 LKENGIQA-SKDIKLLLLGAGESGKSTIVKQMKIIHESGFTNE 551
L++ ++A SK+ L+LLG SGK+T + Q + E G+T++
Sbjct: 515 LRKQFLEAVSKNQILVLLGETGSGKTTQITQ--YLAEEGYTSD 555
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 25.0 bits (52), Expect = 9.7
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -3
Query: 654 LYCHR*CPSWAWH 616
LY ++ CPSW W+
Sbjct: 626 LYYYQGCPSWTWY 638
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,373
Number of Sequences: 5004
Number of extensions: 54104
Number of successful extensions: 162
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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