Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_D05
(739 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi... 32 0.074
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi... 32 0.098
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 31 0.23
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po... 31 0.23
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe... 30 0.30
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica... 29 0.52
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 0.91
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch... 28 1.2
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 27 2.1
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ... 27 3.7
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 26 4.9
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 26 6.4
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 26 6.4
SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr... 25 8.5
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 25 8.5
>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
Dld1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 32.3 bits (70), Expect = 0.074
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +2
Query: 188 KNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGTNLSRVAKK 346
K +TV+GGG++G + V ++ G VT+V+ I LSR+ K
Sbjct: 218 KKMTVLGGGIIGLEMGSVWSRLGAEVTVVEFLPAVGGPMDADISKALSRIISK 270
>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
Gut2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 649
Score = 31.9 bits (69), Expect = 0.098
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +2
Query: 191 NVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKS 313
+V +IGGG G+G+A ++ G NV L++ ++ A + KS
Sbjct: 69 DVLIIGGGATGTGVAVDASTRGLNVCLLEKTDFASETSSKS 109
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 30.7 bits (66), Expect = 0.23
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Frame = +2
Query: 200 VIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALA--KAKKSIGTNLSRVAKKMYKDNPQEV 373
VIGGGL G G NV L+D N A K + G N + + + V
Sbjct: 43 VIGGGLAGLSATNTILDLGGNVLLLD-KNTAFGGNSVKAASGINAAPTQLQFDQHVSDSV 101
Query: 374 EKFVNDSL 397
F NDS+
Sbjct: 102 NTFYNDSI 109
>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 261
Score = 30.7 bits (66), Expect = 0.23
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 188 KNVTVIGGGL-MGSGIAQVSAQAGQNVTLVDVSNDALAKAKK 310
KN V G +G IA AQAG NV + ++ D KAKK
Sbjct: 22 KNCVVFGAAKGIGFSIATAFAQAGGNVIITYLTTDPTEKAKK 63
>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 30.3 bits (65), Expect = 0.30
Identities = 21/59 (35%), Positives = 29/59 (49%)
Frame = +2
Query: 191 NVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGTNLSRVAKKMYKDNPQ 367
NV V+G G + + Q + AG NVT+ S++ L AKK T+ YK PQ
Sbjct: 168 NVLVLGTGGVSTFALQFALAAGANVTVTSSSDEKLEFAKKLGATHTIN-----YKKTPQ 221
>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
modification enzyme|Schizosaccharomyces pombe|chr
2|||Manual
Length = 666
Score = 29.5 bits (63), Expect = 0.52
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 188 KNVTVIGGGLMGSGIAQVSAQAGQNVTLVDVSNDALAK 301
KNV VIGGG G A +++ G TL+ S D + +
Sbjct: 17 KNVVVIGGGHAGVEAAAAASRLGAKTTLLTKSFDNIGQ 54
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 28.7 bits (61), Expect = 0.91
Identities = 23/103 (22%), Positives = 46/103 (44%)
Frame = +2
Query: 266 TLVDVSNDALAKAKKSIGTNLSRVAKKMYKDNPQEVEKFVNDSLGRINTATDAAEASKSA 445
TL D +ND K K +N S + K+ ++ +EK + + + +A SK
Sbjct: 655 TLSDENNDLRTKLLKLEESNKSLIKKQ---EDVDSLEKNIQTLKEDLRKSEEALRFSKLE 711
Query: 446 DLVVEAIVENIGVKHKLFKQLDGVAPSHTIFASNTSSLSINEI 574
+ +++N+ KH+ + S A NT+++ +E+
Sbjct: 712 AKNLREVIDNLKGKHETLEAQRNDLHSSLSDAKNTNAILSSEL 754
>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +2
Query: 569 EIASVVKRKDKFGGLHFFNPVPVMRLLXVVKGSETSEATYKTMME-WGKSXGK 724
E++ V +F GLHF V R L G + Y+T + G++ GK
Sbjct: 250 EVSKVCFNHPEFAGLHFTGSTAVFRSLWGTIGENVANGKYRTYPKIVGETGGK 302
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 27.5 bits (58), Expect = 2.1
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 157 FKFLCNAKCYQECNSYWRWSNGL 225
F F+CNA Y N Y W+ L
Sbjct: 619 FYFVCNATSYSSLNPYGNWARPL 641
>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 539
Score = 26.6 bits (56), Expect = 3.7
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Frame = +2
Query: 221 GSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIGTNLSRVAKK-----MYKDNPQEVEKFV 385
GS + + A + +SND+LAKA S+ T++S++ ++K P+ +
Sbjct: 317 GSFTTHLDSNASMAKSFSQISNDSLAKA-SSVATSMSQMGAAVPTTGLWKRQPR-ILLVE 374
Query: 386 NDSLGRINTATDAAEASKSADLVVEAIVENIGVKHK 493
+D L R T + S D V+ V+ IG +K
Sbjct: 375 DDELSRRMT----IKFLTSFDCQVDVAVDGIGAVNK 406
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 145 RKKFFKFLCNAKCY 186
RK+FF FL N +CY
Sbjct: 629 RKRFFDFLVNTQCY 642
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 25.8 bits (54), Expect = 6.4
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 176 QSAIKNVTVI--GGGLMGSGIAQVSAQAGQNVTLVDVSNDALAKAKKSIG 319
QS ++ +I GGG++G + V+A + + + + LA SIG
Sbjct: 101 QSCTRDTILIAMGGGVIGDLVGYVAASFMRGIRFIQMPTTLLAMVDSSIG 150
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = +2
Query: 326 LSRVAKKMYKDNPQEVEKFV--NDSLGRINTATDAA--EASKSAD 448
+S++A+ NP + E+FV D+LG D+ EAS AD
Sbjct: 102 ISKIAEAAQASNPDDEEEFVMEEDNLGEAPLLVDSESYEASVKAD 146
>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 322
Score = 25.4 bits (53), Expect = 8.5
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +2
Query: 281 SNDALAK---AKKSIGTNLSRVAKKMYKDNPQEVEKFVNDSLGRINTATDAAEASKSAD 448
S DA+ K A K+ NL +V+ D P+ F ND + + +T A +K AD
Sbjct: 254 STDAVPKKLDASKASSLNLEKVS--YLTDEPKFRFDFNNDEMAVVKLSTGIAAFAKDAD 310
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 25.4 bits (53), Expect = 8.5
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 5/117 (4%)
Frame = +2
Query: 263 VTLVDVSNDALAKA--KKSIGTNLSRVAKKMYKDNPQEVEKFVNDSLGRINTATDAAEAS 436
+T V + LA+A K I + + K K P+E E F+ L N + E
Sbjct: 861 ITEKSVEENILARAQYKLDIDGKVIQAGKFDNKSTPEEREAFLRSLLENENGEEENDEKG 920
Query: 437 KSADLVVEAIVENIGVKHKLFKQLDGVAPSHTIFASNTSS---LSINEIASVVKRKD 598
+ D + I+ + +LFKQ+ + + N + ++E+ +R++
Sbjct: 921 ELDDDELNEILARGDDELRLFKQMTEDLERESPYGKNKEKERLIQVSELPEFYQREE 977
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,961,193
Number of Sequences: 5004
Number of extensions: 60009
Number of successful extensions: 157
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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