Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_D03
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0847 + 23630937-23631099,23631200-23631396,23631604-236317...    29   2.4  
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432...    29   3.2  
02_04_0553 - 23808328-23809530                                         29   4.3  
02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023     29   4.3  
02_04_0531 + 23707978-23709021                                         29   4.3  
03_06_0155 - 32031370-32031707,32033066-32033279                       28   7.5  
05_04_0158 + 18613265-18615304                                         27   9.9  

>12_02_0847 +
           23630937-23631099,23631200-23631396,23631604-23631738,
           23631904-23632077,23632195-23632407,23632507-23632751,
           23632890-23632930,23633200-23633238,23633552-23633565
          Length = 406

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = +1

Query: 469 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLE 645
           +I E+R+R +  ++   A+L+AMK+      N  ++   E     N +LE    K+QL+
Sbjct: 41  EIAEERERFQLEQRGNDALLEAMKE-ELVAANNELEAAKEEISRKNNELE--SVKKQLQ 96


>02_05_0232 + 27041793-27042087,27042822-27042943,27043098-27043219,
            27043601-27043705,27043828-27044257,27044356-27044517,
            27044565-27045260,27045349-27046128,27046441-27046654,
            27047621-27047981,27047993-27048140,27048276-27048419,
            27048784-27048888,27049749-27049794,27050089-27050255,
            27050338-27050490,27050654-27050950,27051053-27051220,
            27051298-27051363,27051451-27051927,27052031-27052768,
            27052935-27053120
          Length = 1993

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +1

Query: 478  EKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQ 639
            E+ ++ ++ +    AMLQ +KD      N  +Q+K     ++  ++E  +TK Q
Sbjct: 1431 EEAKKFQKIKMDLLAMLQRVKDVENLNRNEKMQRKDMEEKIARQRMEIEETKRQ 1484


>02_04_0553 - 23808328-23809530
          Length = 400

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 4   PADESRPGSPRTPHSNVAVLPVQEPVP 84
           P   + P SPRTPH+  ++LPV   +P
Sbjct: 67  PLAPAPPDSPRTPHTYGSLLPVYGDLP 93


>02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023
          Length = 432

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 4   PADESRPGSPRTPHSNVAVLPVQEPVP 84
           P   + P SPRTPH+  ++LPV   +P
Sbjct: 67  PLAPAPPDSPRTPHTYGSLLPVYGDLP 93


>02_04_0531 + 23707978-23709021
          Length = 347

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 22 PGSPRTPHSNVAVLPVQEPVP 84
          P SPRTPH+ V  LPV   +P
Sbjct: 37 PDSPRTPHTYVGFLPVFGDLP 57


>03_06_0155 - 32031370-32031707,32033066-32033279
          Length = 183

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +1

Query: 472 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQL 642
           IEE +QR EEA + +Q     + +A K    +  +    + G+   +  R K+ E L
Sbjct: 98  IEELKQREEEATQAQQQADVKLLEAKKLASQYQKEADKCSSGMDTCEEAREKSSEAL 154


>05_04_0158 + 18613265-18615304
          Length = 679

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
 Frame = +1

Query: 475 EEKRQRLEEAEKKRQAML-----QAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQ 639
           +EK ++ +E E K Q  L     +AMK   KTG N  I+KK ++      + +    +++
Sbjct: 608 QEKVEKNQEKEMKIQEKLGEIFDKAMKSEEKTGQNPGIEKKIQDTAEKKQEHDARVVQDK 667

Query: 640 LE 645
           +E
Sbjct: 668 VE 669


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.129    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,124,245
Number of Sequences: 37544
Number of extensions: 174172
Number of successful extensions: 596
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)