Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_D03
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28981| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.088
SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3)                     32   0.35 
SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037)                    31   0.62 
SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)           31   1.1  
SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_46344| Best HMM Match : ig (HMM E-Value=0.0082)                     29   4.4  
SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)                   29   4.4  
SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0)                     29   4.4  
SB_53860| Best HMM Match : fn3 (HMM E-Value=3.6e-07)                   28   5.8  
SB_47823| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_30292| Best HMM Match : fn3 (HMM E-Value=1.2e-12)                   28   5.8  
SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.8  
SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5)                   28   5.8  
SB_22747| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)                 28   7.6  

>SB_28981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 34.3 bits (75), Expect = 0.088
 Identities = 15/25 (60%), Positives = 21/25 (84%)
 Frame = +1

Query: 472 IEEKRQRLEEAEKKRQAMLQAMKDA 546
           +EE+R+RLE  EK+RQA  QAM++A
Sbjct: 319 LEEERKRLENLEKERQAAQQAMQEA 343


>SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3)
          Length = 1168

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 16/61 (26%), Positives = 35/61 (57%)
 Frame = +1

Query: 469 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEX 648
           ++EEK++RL+  E+ + ++ +A K+ASK+  + T + +S N  ++         K  ++ 
Sbjct: 427 EVEEKKRRLQRYERLQSSLNEAYKEASKSSVDGT-RDESRNEEITQTSCNETSGKTPIKE 485

Query: 649 E 651
           E
Sbjct: 486 E 486


>SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037)
          Length = 703

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 20/56 (35%), Positives = 32/56 (57%)
 Frame = +1

Query: 472 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQ 639
           +EE+R+R EEAEKKR+   +  ++  +    +   KK E   L   QLER K +++
Sbjct: 252 MEEERKRKEEAEKKREEEERKRREEEEAAQKW---KKEEL--LRQQQLEREKEEQE 302


>SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)
          Length = 1806

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/39 (41%), Positives = 26/39 (66%)
 Frame = +1

Query: 475  EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSEN 591
            EE+RQ+ EEA K+R+  L A K++SK+      +++S N
Sbjct: 1344 EERRQKREEARKRREEKL-AKKESSKSSNKRKSKERSGN 1381


>SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2391

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +3

Query: 525  APGHE--RCQQDRTQLHHPKEERKLRFEQ 605
            APGH+  RC QD  +L+  K ERK R EQ
Sbjct: 1105 APGHQPLRCLQDVEELYLSKVERKDRLEQ 1133


>SB_46344| Best HMM Match : ig (HMM E-Value=0.0082)
          Length = 181

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 86 LGTGSWTGSTATLECGVRGXP 24
          + T SW G   +L+C VRG P
Sbjct: 1  MNTSSWDGKVLSLQCKVRGLP 21


>SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)
          Length = 924

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = +1

Query: 475 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEXE 651
           EE+R++ EEAE++R+   +  K   +      +QK+ +         +R + ++Q   E
Sbjct: 636 EERRRQQEEAERQRREQEEVFKQQEQQRQQLELQKRQQEQQRQQELQKRQQEEKQRMAE 694


>SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0)
          Length = 729

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 469 DIEEKRQRLEEAEKKRQAMLQAMKD 543
           D+EEK + LEEA+ + +A+   MKD
Sbjct: 522 DLEEKAKELEEAKSENEAISGKMKD 546


>SB_53860| Best HMM Match : fn3 (HMM E-Value=3.6e-07)
          Length = 288

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 98 VTQSLGTGSWTGSTATLECGVRGXP 24
          V+ +  T SW G   +L+C  RG P
Sbjct: 2  VSSTTNTSSWDGKVLSLQCKARGVP 26


>SB_47823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 671

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = +1

Query: 475 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLE 645
           EEKR   EEA K+++++ + +  + K     T +K+ E        ++ N+  ++ E
Sbjct: 459 EEKRTESEEAPKRKKSLKRRLSFSRKNKAKKTEEKQDEEGEAREGTMDDNEVSQKPE 515


>SB_30292| Best HMM Match : fn3 (HMM E-Value=1.2e-12)
          Length = 519

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 104 KSVTQSLGTGSWTGSTATLECGVRGXP 24
           K    ++ T SW G   +L+C  RG P
Sbjct: 368 KDGASTMNTSSWDGKVLSLQCKARGLP 394


>SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 493

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +1

Query: 205 PAPKQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRA 324
           PA ++EGEG+P+  +R+ Q  +  ++Q K    + +K ++
Sbjct: 56  PANEEEGEGEPKPKRRKAQPSAPKEKQTKSRKRDKKKDKS 95


>SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5)
          Length = 435

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +2

Query: 548 ARPDPTSPSKRRAKTSV*AMPSWSATRPRSSWXR 649
           ARP P+  +K   KT    MP  S   P+SSW R
Sbjct: 290 ARPRPSCKTKPSPKTKT--MPPRSRLEPQSSWNR 321


>SB_22747| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)
          Length = 337

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 406 RGAFLLRHEKPCAWPASL*GV 344
           RGA L R+E PC W A L G+
Sbjct: 69  RGAALQRNEPPCMWIAILNGI 89


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.129    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,308,571
Number of Sequences: 59808
Number of extensions: 194082
Number of successful extensions: 714
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)