Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_D03
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039039-6|AAO25996.1|  308|Caenorhabditis elegans Troponin t pr...    38   0.006
AF039039-5|AAB94176.2|  347|Caenorhabditis elegans Troponin t pr...    38   0.006
Z75531-10|CAJ85759.1|  500|Caenorhabditis elegans Hypothetical p...    29   2.2  
U80441-1|AAB37651.1|  647|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AL117195-12|CAB60765.1|  425|Caenorhabditis elegans Hypothetical...    29   3.8  
AF025458-4|AAB70975.4|  374|Caenorhabditis elegans Hypothetical ...    27   8.8  

>AF039039-6|AAO25996.1|  308|Caenorhabditis elegans Troponin t
           protein 4, isoform b protein.
          Length = 308

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 36/147 (24%), Positives = 57/147 (38%), Gaps = 7/147 (4%)
 Frame = +1

Query: 226 EGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAXXXXXXXXXXXXQAKRKVSXXXXXXXX 405
           EG+   +  + +  +D   +L++Y    R +R             QA+RK++        
Sbjct: 46  EGEKAMLAAKRRHENDEQAKLEDYEKARRSEREKEEEELEKLKEKQAQRKLAREQEEREA 105

Query: 406 XXXXXXXXXXXXXXXXXXXXXDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKS 585
                                  EEK+++ EE  KK Q M+       + G NF IQKK 
Sbjct: 106 AERKRLDEERRQKEEQERRARAEEEKKRKEEEKLKKAQ-MMGGGFPGQQGGRNFVIQKKE 164

Query: 586 ENFGLSN-------AQLERNKTKEQLE 645
           E+ G+ +       A+ E   TKEQ E
Sbjct: 165 ESAGVGDRFGNIVQAKQEMGMTKEQQE 191


>AF039039-5|AAB94176.2|  347|Caenorhabditis elegans Troponin t
           protein 4, isoform a protein.
          Length = 347

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 36/147 (24%), Positives = 57/147 (38%), Gaps = 7/147 (4%)
 Frame = +1

Query: 226 EGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAXXXXXXXXXXXXQAKRKVSXXXXXXXX 405
           EG+   +  + +  +D   +L++Y    R +R             QA+RK++        
Sbjct: 46  EGEKAMLAAKRRHENDEQAKLEDYEKARRSEREKEEEELEKLKEKQAQRKLAREQEEREA 105

Query: 406 XXXXXXXXXXXXXXXXXXXXXDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKS 585
                                  EEK+++ EE  KK Q M+       + G NF IQKK 
Sbjct: 106 AERKRLDEERRQKEEQERRARAEEEKKRKEEEKLKKAQ-MMGGGFPGQQGGRNFVIQKKE 164

Query: 586 ENFGLSN-------AQLERNKTKEQLE 645
           E+ G+ +       A+ E   TKEQ E
Sbjct: 165 ESAGVGDRFGNIVQAKQEMGMTKEQQE 191


>Z75531-10|CAJ85759.1|  500|Caenorhabditis elegans Hypothetical
           protein C54D10.12 protein.
          Length = 500

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
 Frame = +1

Query: 475 EEKRQRLEEAEKKRQAMLQAMKDAS------KTGPNFTIQKKSENFGLSNAQLERNKTKE 636
           EEK Q++ E E+K Q +L   K+ +      +   +  I++K E     N Q  R K  E
Sbjct: 208 EEKLQQIREKERKLQELLLRQKEEAEEEALRRLANDSEIEQKLEKIRYENEQQARQKDNE 267

Query: 637 Q 639
           Q
Sbjct: 268 Q 268


>U80441-1|AAB37651.1|  647|Caenorhabditis elegans Hypothetical
           protein F27C1.6 protein.
          Length = 647

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +1

Query: 469 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLER 621
           D E+ ++ ++E EK +   L      S  GP  T +K+ +NF +   +  R
Sbjct: 514 DFEDMKEGVKEKEKVKDVDLNLAGWGSWVGPGMTEKKRRQNFVIKAKEKRR 564


>AL117195-12|CAB60765.1|  425|Caenorhabditis elegans Hypothetical
           protein Y57A10A.19 protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/54 (22%), Positives = 31/54 (57%)
 Frame = +1

Query: 475 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKE 636
           +EK+Q+L+E EK+R+ + Q  ++          ++ +E+    +++ ++ K +E
Sbjct: 216 KEKKQKLKEMEKRREKLRQKERELLAVSDKVKKEEPAESSDEEDSRKDQRKPRE 269


>AF025458-4|AAB70975.4|  374|Caenorhabditis elegans Hypothetical
           protein C01B12.2 protein.
          Length = 374

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
 Frame = +1

Query: 478 EKRQRLEEAEKKRQAMLQAMKDASKTGP----NFTIQKKSENFGLSNAQLERNKTKEQL 642
           E ++R EEAE+K Q    A+K   +T      N TIQ K+    L    +E     + L
Sbjct: 220 ENQKRQEEAERKLQEKQNAIKCLMETDSVTFWNQTIQSKTSTVVLDRISMELGSLAQNL 278


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.314    0.129    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,546,974
Number of Sequences: 27780
Number of extensions: 131072
Number of successful extensions: 532
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)