Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_D01
         (555 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7K408 Cluster: Formate-dependent nitrite reductase, me...    37   0.36 
UniRef50_Q9N2T3 Cluster: Putative uncharacterized protein; n=1; ...    34   1.9  

>UniRef50_A7K408 Cluster: Formate-dependent nitrite reductase,
           membrane component; n=11; Gammaproteobacteria|Rep:
           Formate-dependent nitrite reductase, membrane component
           - Vibrio sp. Ex25
          Length = 376

 Score = 36.7 bits (81), Expect = 0.36
 Identities = 26/112 (23%), Positives = 49/112 (43%)
 Frame = +3

Query: 192 YYYTIVPITSTILLVLYTPTYTNQILIASCIYLNTFVINVMAVFKSFCRPILRVSRGKQF 371
           +Y  I P +   L  L+ P ++   ++ + +YL   +IN+          I ++S G+  
Sbjct: 82  FYAHITPWSWMSLGSLFLPVFSGLAVVTAWLYLRQDLINLRNQPGKVLPLISKLSLGEWV 141

Query: 372 LAHPRKY*IVAVFCLLGLRHSAYPHGNPSVTILCSLLHQPDFQEIWIRSGFL 527
           L+      + A+  L G+  + Y     +V    SL HQP    +W  + F+
Sbjct: 142 LSRRAMLMVSAITVLSGITIAVYTGAEIAVVKSRSLWHQPASPILWFVTAFM 193


>UniRef50_Q9N2T3 Cluster: Putative uncharacterized protein; n=1;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 666

 Score = 34.3 bits (75), Expect = 1.9
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = +3

Query: 192 YYYTIVPITSTILLVLYTPTYTNQILIASCIYLNTFVINVMAVFKS 329
           ++Y++ P+   +  + Y   Y N+ + + CI+ N FVI +  +F+S
Sbjct: 211 FFYSMYPMVDPLPTIYYVDEYRNEFM-SECIFNNEFVIAIRHLFRS 255


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 533,910,447
Number of Sequences: 1657284
Number of extensions: 9983691
Number of successful extensions: 21095
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21084
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 36655321736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)