Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_D01
(555 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0423 - 3092863-3094959 31 0.47
02_01_0413 - 3028946-3031111 31 0.47
02_01_0412 - 3005600-3007759 31 0.47
02_01_0411 - 2998806-3000938 31 0.82
02_03_0406 + 18663986-18664059,18665082-18665405,18665499-186655... 30 1.1
02_01_0417 - 3048519-3048710,3048903-3050600,3050622-3050909,305... 29 3.3
02_01_0406 - 2958933-2962076 29 3.3
02_01_0404 - 2945611-2948802 29 3.3
06_03_1488 + 30484904-30485134,30485239-30487159,30487255-304876... 27 7.6
02_01_0408 - 2972240-2975380 27 7.6
>02_01_0423 - 3092863-3094959
Length = 698
Score = 31.5 bits (68), Expect = 0.47
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +2
Query: 389 VLNCSSFLFTRSPTFSLSTWEPIGNYFM*SVTSTRFSGNLDSEW 520
VLN SS LFT + F +TWE + N + + ++ RF+G + + +
Sbjct: 144 VLNISSNLFTGN--FPSTTWERMNNLVVLNASNNRFTGQMPTSF 185
>02_01_0413 - 3028946-3031111
Length = 721
Score = 31.5 bits (68), Expect = 0.47
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +2
Query: 389 VLNCSSFLFTRSPTFSLSTWEPIGNYFM*SVTSTRFSGNLDSEW 520
VLN SS LFT + F +TWE + N + ++ FSG++ S +
Sbjct: 159 VLNISSNLFTGA--FPSTTWEKMSNLVAINASNNSFSGHIPSSF 200
>02_01_0412 - 3005600-3007759
Length = 719
Score = 31.5 bits (68), Expect = 0.47
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +2
Query: 389 VLNCSSFLFTRSPTFSLSTWEPIGNYFM*SVTSTRFSGNLDS 514
VLN SS LFT + F +TWE + N F + ++ F+G + S
Sbjct: 158 VLNISSNLFTGA--FPSTTWEKMSNLFAINASNNSFTGYIPS 197
>02_01_0411 - 2998806-3000938
Length = 710
Score = 30.7 bits (66), Expect = 0.82
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +2
Query: 389 VLNCSSFLFTRSPTFSLSTWEPIGNYFM*SVTSTRFSGNLDSEW 520
VLN SS FT + F STWE + N +V++ F+G++ S +
Sbjct: 148 VLNISSNQFTGA--FPSSTWEKMSNLVAINVSNNSFTGHIPSSF 189
>02_03_0406 +
18663986-18664059,18665082-18665405,18665499-18665559,
18666136-18666282,18666368-18666492,18666619-18666648,
18666689-18666893,18667532-18667741,18667886-18667888,
18670034-18670942,18671239-18672069
Length = 972
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +2
Query: 389 VLNCSSFLFTRSPTFSLSTWEPIGNYFM*SVTSTRFSGNLDSEW 520
VLN SS LFT + F +TWE + N + ++ F+G++ S +
Sbjct: 513 VLNISSNLFTGA--FPSTTWEKMSNLVAINASNNSFTGHIPSSF 554
>02_01_0417 -
3048519-3048710,3048903-3050600,3050622-3050909,
3052308-3052377,3052417-3052668,3053235-3055297
Length = 1520
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 389 VLNCSSFLFTRSPTFSLSTWEPIGNYFM*SVTSTRFSGNLDS 514
VLN SS LFT + F +TWE + F + ++ F+G + S
Sbjct: 157 VLNISSNLFTGA--FPSTTWEKTSSLFAINASNNSFTGYIPS 196
>02_01_0406 - 2958933-2962076
Length = 1047
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2
Query: 389 VLNCSSFLFTRSPTFSLSTWEPIGNYFM*SVTSTRFSGNLDSEW 520
VLN SS LFT F S W+ + N +V+S +F+G + + +
Sbjct: 156 VLNISSNLFTGQ--FPSSIWDVMKNLVALNVSSNKFTGKIPTRF 197
>02_01_0404 - 2945611-2948802
Length = 1063
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2
Query: 389 VLNCSSFLFTRSPTFSLSTWEPIGNYFM*SVTSTRFSGNLDSEW 520
VLN SS FT F +TWE + N M + ++ F+G++ S +
Sbjct: 165 VLNISSNSFTGQ--FPSATWEMMKNLVMLNASNNSFTGHIPSNF 206
>06_03_1488 +
30484904-30485134,30485239-30487159,30487255-30487691,
30487777-30487983
Length = 931
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/57 (22%), Positives = 29/57 (50%)
Frame = +3
Query: 201 TIVPITSTILLVLYTPTYTNQILIASCIYLNTFVINVMAVFKSFCRPILRVSRGKQF 371
T +P++ ++ + + +Q C + + V++ A+ +SF P +SRG+ F
Sbjct: 496 TDMPLSVSVSESVPASGFDDQSYTGECKFADANVVSPRALVRSFSAPASGISRGRLF 552
>02_01_0408 - 2972240-2975380
Length = 1046
Score = 27.5 bits (58), Expect = 7.6
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2
Query: 389 VLNCSSFLFTRSPTFSLSTWEPIGNYFM*SVTSTRFSGNLDSEW 520
VLN SS LF F STW+ + N +V++ FSG++ + +
Sbjct: 158 VLNISSNLFKGQ--FPSSTWKVMKNLVKLNVSNNSFSGHIPTNF 199
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,541,566
Number of Sequences: 37544
Number of extensions: 248100
Number of successful extensions: 471
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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