Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P16_F_D01
         (555 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52979| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_14206| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-12)                 27   7.8  
SB_34105| Best HMM Match : Extensin_2 (HMM E-Value=4.8)                27   7.8  

>SB_52979| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 180 QIQMYYYTIVPITSTILLVLYTPTYTNQILIASCIYLNTFVINVMAVFKSFCRPI 344
           +I +Y Y  V  T  +L+ L   +YT  +++   +Y   F+     VFK FC  +
Sbjct: 326 KINLYKYEKVSRTMVLLIALLFASYTTYLVVMPTVY---FIFGYNEVFK-FCSDV 376


>SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = +3

Query: 171 NYYQIQMYYYTIVPITSTILLVL-YTPTYTNQILIAS--CIYLNTFVIN 308
           +Y+  Q +Y+    IT+T +++   T T+T  I+I S   I +NT+  N
Sbjct: 575 HYHHCQHHYFHRFHITTTTIIIFTITSTFTAIIIITSVTTIIINTYATN 623


>SB_14206| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-12)
          Length = 336

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = -2

Query: 209 YYGVIVHLNL-IIIKTFKMY-LSIIYYIICMNLMSKMFLYDI 90
           Y  +++H+    +I T K+Y L ++Y+I C  ++S  F+ ++
Sbjct: 133 YLALLLHMRYNALITTSKVYRLVLVYWIACAGIVSLRFMPEV 174


>SB_34105| Best HMM Match : Extensin_2 (HMM E-Value=4.8)
          Length = 623

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 215 YQYYITSTVHTNIYKPDSHCIMYLLKYVCNK 307
           YQYY TS + T+I  P     + L +Y CN+
Sbjct: 435 YQYYCTSIIATSITAPVLLQPVLLHQYYCNQ 465


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,498,373
Number of Sequences: 59808
Number of extensions: 330535
Number of successful extensions: 651
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)