Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_C24
(718 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 354 5e-98
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 199 2e-51
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 198 4e-51
SB_56| Best HMM Match : Actin (HMM E-Value=0) 198 5e-51
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 197 6e-51
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 158 5e-39
SB_54| Best HMM Match : Actin (HMM E-Value=0) 109 3e-24
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 97 1e-20
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 87 1e-17
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 83 3e-16
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 57 2e-08
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 46 4e-05
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 38 0.006
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 35 0.076
SB_27477| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 31 0.93
SB_37853| Best HMM Match : REJ (HMM E-Value=0.00025) 31 1.2
SB_28071| Best HMM Match : GETHR (HMM E-Value=2.3e-22) 30 2.2
SB_55015| Best HMM Match : DUF457 (HMM E-Value=9.6) 29 2.8
SB_44229| Best HMM Match : DUF947 (HMM E-Value=0.67) 29 5.0
SB_23940| Best HMM Match : MuDR (HMM E-Value=0.24) 29 5.0
SB_33833| Best HMM Match : DUF947 (HMM E-Value=0.2) 29 5.0
SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0) 29 5.0
SB_58594| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_16136| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0025) 28 6.6
SB_6953| Best HMM Match : Phage_integrase (HMM E-Value=0.33) 28 6.6
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13) 28 6.6
SB_56997| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 354 bits (870), Expect = 5e-98
Identities = 158/207 (76%), Positives = 178/207 (85%)
Frame = +2
Query: 98 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 277
MD G VIVCDNGTGFVKCG+AGSNFPA IFPSMVGRPIIR+ K+GDI+VKDLMVGDE
Sbjct: 1 MDANGNSVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDE 60
Query: 278 ASKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNR 457
AS+LR MLEV+YPM+NG+VRNW+DM HVWDYTFG SKMN+DP+ TK+LLTEPP+NP KNR
Sbjct: 61 ASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNR 120
Query: 458 EKMIEVMFEKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHICPVYEEFALPHLTR 637
EKMIEVMFE Y+F+ Y+AIQAVLTLYAQGL+ THICPVYE FALPHLTR
Sbjct: 121 EKMIEVMFENYQFEGVYIAIQAVLTLYAQGLLTGVVIDSGDGVTHICPVYEGFALPHLTR 180
Query: 638 RLDIXGRDITRYLIKLLLLRGYAFXHS 718
RLDI GRDIT+YLIKL+LLRGYAF H+
Sbjct: 181 RLDIAGRDITKYLIKLMLLRGYAFNHT 207
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 199 bits (486), Expect = 2e-51
Identities = 96/204 (47%), Positives = 131/204 (64%)
Frame = +2
Query: 98 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 277
M+D +V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 58
Query: 278 ASKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNR 457
A R +L + YP+E+G+V NW+DM +W +TF +++ V P+E +LLTE P+NP NR
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANR 117
Query: 458 EKMIEVMFEKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHICPVYEEFALPHLTR 637
EKM ++MFE + + YVAIQAVL+LYA G TH P+YE +ALPH
Sbjct: 118 EKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAII 177
Query: 638 RLDIXGRDITRYLIKLLLLRGYAF 709
RLD+ GRD+T YL+K+L RGY+F
Sbjct: 178 RLDLAGRDLTDYLMKILTERGYSF 201
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 198 bits (483), Expect = 4e-51
Identities = 96/204 (47%), Positives = 130/204 (63%)
Frame = +2
Query: 98 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 277
M D +V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 58
Query: 278 ASKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNR 457
A R +L + YP+E+G+V NW+DM +W +TF +++ V P+E +LLTE P+NP NR
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANR 117
Query: 458 EKMIEVMFEKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHICPVYEEFALPHLTR 637
EKM ++MFE + + YVAIQAVL+LYA G TH P+YE +ALPH
Sbjct: 118 EKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIL 177
Query: 638 RLDIXGRDITRYLIKLLLLRGYAF 709
RLD+ GRD+T YL+K+L RGY+F
Sbjct: 178 RLDLAGRDLTDYLMKILTERGYSF 201
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 198 bits (482), Expect = 5e-51
Identities = 96/204 (47%), Positives = 133/204 (65%)
Frame = +2
Query: 98 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 277
M+D+ ++V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MEDEVAALVV-DNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 57
Query: 278 ASKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNR 457
A R +L + YP+E+G+V NW+DM +W +TF +++ V P+E +LLTE P+NP NR
Sbjct: 58 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANR 116
Query: 458 EKMIEVMFEKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHICPVYEEFALPHLTR 637
EKM ++MFE + + YVAIQAVL+LYA G TH P+YE +ALPH
Sbjct: 117 EKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIL 176
Query: 638 RLDIXGRDITRYLIKLLLLRGYAF 709
RLD+ GRD+T YL+K+L RGY+F
Sbjct: 177 RLDLAGRDLTDYLMKILTERGYSF 200
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 197 bits (481), Expect = 6e-51
Identities = 94/196 (47%), Positives = 128/196 (65%)
Frame = +2
Query: 122 IVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDEASKLRSML 301
+V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDEA R +L
Sbjct: 8 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGIL 65
Query: 302 EVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNREKMIEVMF 481
+ YP+E+G+V NW+DM +W +TF +++ V P+E +LLTE P+NP NREKM ++MF
Sbjct: 66 TLKYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 124
Query: 482 EKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHICPVYEEFALPHLTRRLDIXGRD 661
E + + YVAIQAVL+LYA G TH P+YE +ALPH RLD+ GRD
Sbjct: 125 ETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 184
Query: 662 ITRYLIKLLLLRGYAF 709
+T YL+K+L RGY+F
Sbjct: 185 LTDYLMKILTERGYSF 200
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 158 bits (383), Expect = 5e-39
Identities = 83/198 (41%), Positives = 113/198 (57%)
Frame = +2
Query: 98 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 277
M D +V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 58
Query: 278 ASKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNR 457
A R +L + YP+E+G+V NW+DM +W +TF +++ V P+E +LLTE P+NP NR
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANR 117
Query: 458 EKMIEVMFEKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHICPVYEEFALPHLTR 637
EKM ++MFE + + YVAIQAVL+LYA G +H P+YEE T
Sbjct: 118 EKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEERGYSFTTT 177
Query: 638 RLDIXGRDITRYLIKLLL 691
RDI L + L
Sbjct: 178 AEREIVRDIKEKLCYVAL 195
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 109 bits (261), Expect = 3e-24
Identities = 48/117 (41%), Positives = 74/117 (63%)
Frame = +2
Query: 359 VWDYTFGPSKMNVDPKETKILLTEPPMNPTKNREKMIEVMFEKYEFDSAYVAIQAVLTLY 538
+W++ F ++ V ++ +LLTE P+NP NRE+M+++MFE + YVA+QAV+ LY
Sbjct: 2131 MWEHAF--DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 539 AQGLIXXXXXXXXXXXTHICPVYEEFALPHLTRRLDIXGRDITRYLIKLLLLRGYAF 709
A G +H PVY+ + LPH T+R+D+ GRD+T YL +L+ RGY+F
Sbjct: 2189 ASGRTTGTVFDCGDGVSHTVPVYDGYWLPHATQRIDLAGRDLTHYLQRLVTERGYSF 2245
Score = 43.6 bits (98), Expect = 2e-04
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +2
Query: 101 DDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRP 214
+ G V+V DNG+GF K G + P +FP++VGRP
Sbjct: 2090 EQNGGTVVVIDNGSGFCKAGLSTDESPRVVFPAIVGRP 2127
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 97.1 bits (231), Expect = 1e-20
Identities = 45/101 (44%), Positives = 61/101 (60%)
Frame = +2
Query: 416 ILLTEPPMNPTKNREKMIEVMFEKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHI 595
+LLTE P+NP +NREK EV FE + + ++++QAVL+LYA G +H
Sbjct: 129 VLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDAGDGVSHS 188
Query: 596 CPVYEEFALPHLTRRLDIXGRDITRYLIKLLLLRGYAFXHS 718
P+YE FA+PH R DI GRD++RYL LL G+ F S
Sbjct: 189 VPIYEGFAMPHSIMRTDIAGRDVSRYLRLLLRKEGHCFHSS 229
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 87.0 bits (206), Expect = 1e-17
Identities = 41/86 (47%), Positives = 54/86 (62%)
Frame = +2
Query: 452 NREKMIEVMFEKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHICPVYEEFALPHL 631
N + M ++MFE + + YVAIQAVL+LYA G TH P+YE +ALPH
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHA 137
Query: 632 TRRLDIXGRDITRYLIKLLLLRGYAF 709
RLD+ GRD+T YL+K+L RGY+F
Sbjct: 138 IIRLDLAGRDLTDYLMKILTERGYSF 163
Score = 84.6 bits (200), Expect = 7e-17
Identities = 43/100 (43%), Positives = 60/100 (60%)
Frame = +2
Query: 98 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 277
MDD +++ DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MDDDVAALVI-DNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 57
Query: 278 ASKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNV 397
A R +L + YP+E+G+V NW+DM + TF M V
Sbjct: 58 AQSKRGILTLKYPIEHGIVTNWDDMEKIMFETFNSPAMYV 97
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 82.6 bits (195), Expect = 3e-16
Identities = 38/79 (48%), Positives = 50/79 (63%)
Frame = +2
Query: 473 VMFEKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHICPVYEEFALPHLTRRLDIX 652
+MFE + + YVAIQAVL+LYA G +H P+YE +ALPH RLD+
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVVFDSGDGVSHNVPIYEGYALPHAILRLDLA 60
Query: 653 GRDITRYLIKLLLLRGYAF 709
GRD+T YL+KL+ RGY+F
Sbjct: 61 GRDLTDYLMKLMTERGYSF 79
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 56.8 bits (131), Expect = 2e-08
Identities = 31/118 (26%), Positives = 56/118 (47%)
Frame = +2
Query: 314 PMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNREKMIEVMFEKYE 493
P+++G++ +W+ + DY + + + D +L++E N REK+ E+MFEKY
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKN-IKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYN 61
Query: 494 FDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHICPVYEEFALPHLTRRLDIXGRDIT 667
+ ++ +VLT +A G T PV++ + L R + G IT
Sbjct: 62 VPAFFLCKNSVLTAFANGRSNGLVIDSGATQTSAVPVHDGYVLQQAIVRSPLAGDFIT 119
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 45.6 bits (103), Expect = 4e-05
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +2
Query: 98 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGD-IDVKDLMVGD 274
+D + IV DNG G K GFAG P I P++VG P R IGD ++VKD
Sbjct: 695 LDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNP-QRFSMLIGDNVNVKDYKKYG 753
Query: 275 EASKLRS 295
+A+ +S
Sbjct: 754 DAAVAKS 760
Score = 32.3 bits (70), Expect = 0.40
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = +2
Query: 518 QAVLTLYAQGLIXXXXXXXXXXXTHICPVYEEFALPHLTRRLDIXGRDITRYLIKLLL-L 694
Q L+LYA G+ T +YE L H + L+I G +T L + L
Sbjct: 767 QLSLSLYASGMTLGVCLSSGFSCTQAAVIYEGHTLNHTLQTLEIGGHHLTENLKQYLRDQ 826
Query: 695 RGYAFXHS 718
RG+ F S
Sbjct: 827 RGHNFTSS 834
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 38.3 bits (85), Expect = 0.006
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Frame = +2
Query: 122 IVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDEASKLRSML 301
+V D G K GFA + P I P+ I +A++ + + L +GD+ + +
Sbjct: 236 LVLDCGACSQKIGFASNQAPRSI-PNA----IFKAKS-----ERRKLFIGDQIEECKDYS 285
Query: 302 EVSY--PMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTE 430
+ Y P + G + NW+ +WDYTFG K ++ +IL E
Sbjct: 286 ALFYVLPFQKGFLVNWDVEKQIWDYTFG--KEGLEDAMDEILFEE 328
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 34.7 bits (76), Expect = 0.076
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +2
Query: 122 IVCDNGTGFVKCGFAGSNFPAFIFPSMVGRP 214
+V D G+ K GFAG + P +FP +VGRP
Sbjct: 1359 LVIDVGSHMWKVGFAGDDAPKGVFPPIVGRP 1389
>SB_27477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1800
Score = 31.1 bits (67), Expect = 0.93
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +2
Query: 248 DVKDLMVGDEASKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGP 382
D+K+ M + A+K+RS+ E + P + ++ D+ VWD F P
Sbjct: 598 DLKETMAREIAAKVRSIAEATTPSGSYLLDALGDIDRVWDRFFPP 642
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 31.1 bits (67), Expect = 0.93
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 587 THICPVYEEFALPHLTRRLDIXGRDITRYLIKLL 688
TH+ PV E + + + + I GRDIT ++ +LL
Sbjct: 73 THVIPVAEGYVIGSCIKHIPIAGRDITFFVQQLL 106
>SB_37853| Best HMM Match : REJ (HMM E-Value=0.00025)
Length = 2182
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 281 SKLRSMLEVSYPMENGVVRNWEDMCHVWD 367
SKL + + + P+ N V ++ MC+VWD
Sbjct: 1832 SKLSNQINMKIPLRNMPVNDFTPMCYVWD 1860
>SB_28071| Best HMM Match : GETHR (HMM E-Value=2.3e-22)
Length = 439
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -1
Query: 358 VAHVLPITYDPILHRVANFKHGSQFGCFITHHQVLNINISYFV 230
VAH Y + HRV + + G +GC +TH V+ I F+
Sbjct: 394 VAHRHGDMYGCLTHRVVSHRQGDVYGC-LTHRTVVRRKIQIFM 435
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 361 HVAHVLPITYDPILHRVANFKHGSQFGCFITHHQV 257
+V H Y + HRV +HG +GC +TH V
Sbjct: 377 NVTHRYGDVYGCLTHRVVAHRHGDMYGC-LTHRVV 410
Score = 28.7 bits (61), Expect = 5.0
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Frame = -1
Query: 361 HVAHVLPITYDPILHRVANFKHGSQFGCFITHHQVLNINISYFVFCAYDRPAD--HGREY 188
+VAH Y + HR +HG +GC +TH V + + + C R HG Y
Sbjct: 105 NVAHRHGDVYGCLTHRNVTHRHGDVYGC-LTHRNVTHRHGDVY-GCLTHRTVTHRHGDVY 162
Query: 187 KCRKIATSEATFHKAGTV 134
C T H+ G V
Sbjct: 163 GC---LTHRNVTHRHGDV 177
>SB_55015| Best HMM Match : DUF457 (HMM E-Value=9.6)
Length = 140
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = -1
Query: 475 HLDHFLSILSWIH-WGFGEQNLRLFRIDVHLA--RTECVVPHVAHVLPI 338
H ++SIL +H W F Q+L +F D+H A R V V+ +PI
Sbjct: 85 HEQRYISILLLLHHWEFSSQSLTVFGFDLHGAWGRQAFWVIQVSDFIPI 133
>SB_44229| Best HMM Match : DUF947 (HMM E-Value=0.67)
Length = 465
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = -1
Query: 673 IPRDIPPGYVQPPGEMRQRELFIHGTNVRHTVTRVHDHSRYQSLSVQREH--SLYRDVSA 500
+PR +QP G +++ + G + R + R +SL + R H S Y +S
Sbjct: 300 VPRTYKKLLLQPDGSLKEESFTVSGRKIPLREIRRRELERQESLGLVRNHSDSHYASLST 359
Query: 499 VEL 491
E+
Sbjct: 360 AEV 362
>SB_23940| Best HMM Match : MuDR (HMM E-Value=0.24)
Length = 685
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = -1
Query: 673 IPRDIPPGYVQPPGEMRQRELFIHGTNVRHTVTRVHDHSRYQSLSVQREH--SLYRDVSA 500
+PR +QP G +++ + G + R + R +SL + R H S Y +S
Sbjct: 71 VPRTYKKLLLQPDGSLKEESFTVSGRKIPLREIRRRELERQESLGLVRNHSDSHYASLST 130
Query: 499 VEL 491
E+
Sbjct: 131 AEV 133
>SB_33833| Best HMM Match : DUF947 (HMM E-Value=0.2)
Length = 1106
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = -1
Query: 673 IPRDIPPGYVQPPGEMRQRELFIHGTNVRHTVTRVHDHSRYQSLSVQREH--SLYRDVSA 500
+PR +QP G +++ + G + R + R +SL + R H S Y +S
Sbjct: 391 VPRTYKKLLLQPDGSLKEESFTVSGRKIPLREIRRRELERQESLGLVRNHSDSHYASLST 450
Query: 499 VEL 491
E+
Sbjct: 451 AEV 453
>SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0)
Length = 1301
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 475 HLDHFLSILSWIH-WGFGEQNLRLFRIDVH 389
H ++SIL +H W F Q+L +F D+H
Sbjct: 144 HEQRYISILLLLHHWEFSSQSLTVFGFDLH 173
>SB_58594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1001
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/47 (27%), Positives = 28/47 (59%)
Frame = +2
Query: 248 DVKDLMVGDEASKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGPSK 388
D+K+ M + A+K+RS++ + P + ++ + D+ VW+ F P +
Sbjct: 238 DLKEAMAREIAAKVRSIVGAAAPSGSYLLDAFGDVNRVWERFFLPRR 284
>SB_16136| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0025)
Length = 731
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/47 (27%), Positives = 28/47 (59%)
Frame = +2
Query: 248 DVKDLMVGDEASKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGPSK 388
D+K+ M + A+K+RS++ + P + ++ + D+ VW+ F P +
Sbjct: 147 DLKEAMAREIAAKVRSIVGAAAPSGSYLLDAFGDVNRVWERFFLPRR 193
>SB_6953| Best HMM Match : Phage_integrase (HMM E-Value=0.33)
Length = 721
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/47 (27%), Positives = 28/47 (59%)
Frame = +2
Query: 248 DVKDLMVGDEASKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGPSK 388
D+K+ M + A+K+RS++ + P + ++ + D+ VW+ F P +
Sbjct: 238 DLKEAMAREIAAKVRSIVGAAAPSGSYLLDAFGDVNRVWERFFLPRR 284
>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
Length = 943
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = -1
Query: 673 IPRDIPPGYVQPPGEMRQRELFIHGTNVRHTVTRVHDHSRYQSLSVQREH--SLYRDVSA 500
+PR +QP G +++ + G + R + R +SL + R H S Y +S
Sbjct: 437 VPRTYKRLLLQPDGSLKEESFTVSGRKIPLREIRRRELERQESLGLVRNHSDSHYASLST 496
Query: 499 VEL 491
E+
Sbjct: 497 AEV 499
>SB_56997| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 27.9 bits (59), Expect = 8.7
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = -2
Query: 333 TTPFSI-G*LTSSMDRSLDASSPTIKSLTSISPILFSARMIGLPTMEGNIN-AGKLLPAK 160
T P ++ G T + +R + S T T P+ S M T + +G L P
Sbjct: 531 TRPVTLTGSTTPTGNRLITLSGVTPGIPTGTLPVTLSGTMTPGTTTNRTVPLSGSLTPGT 590
Query: 159 PHFTKPVPLSQTIT 118
P ++PV LS T+T
Sbjct: 591 PTGSRPVTLSGTVT 604
>SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1696
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Frame = -1
Query: 718 GMXESIPSEQKQFDEIPRDIPPGYVQPPGEMRQR----ELFIHGTNVRHTVTRVHDHSRY 551
G+ S Q+Q D I +D+P + P MR + +L + ++++ + +DHS
Sbjct: 1299 GVASSAAIFQRQMDRIFKDLPQRGIPPIAAMRMQRWATKLSAYSYDIQYRSS--NDHSNA 1356
Query: 550 QSLSVQREHSLYRD 509
+LS +H +D
Sbjct: 1357 DALSRLPQHKAPKD 1370
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,926,299
Number of Sequences: 59808
Number of extensions: 528394
Number of successful extensions: 1549
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1523
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -