Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P16_F_C24
(718 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 331 3e-91
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 197 7e-51
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 196 1e-50
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 196 1e-50
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 196 1e-50
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 196 1e-50
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 196 1e-50
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 196 1e-50
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 196 1e-50
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 194 7e-50
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 183 1e-46
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 173 1e-43
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 161 5e-40
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 113 2e-25
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 82 4e-16
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 82 4e-16
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 81 6e-16
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 81 6e-16
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 68 8e-12
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 42 3e-04
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 42 3e-04
U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical pr... 33 0.15
Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr... 31 0.82
AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical ... 31 1.1
Z46996-9|CAA87097.2| 400|Caenorhabditis elegans Hypothetical pr... 30 1.4
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 29 2.5
AL117204-3|CAB55147.2| 675|Caenorhabditis elegans Hypothetical ... 29 4.4
Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical pr... 28 5.8
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ... 28 5.8
Z70783-10|CAC70122.1| 1037|Caenorhabditis elegans Hypothetical p... 28 7.7
AF003385-1|AAB54243.1| 884|Caenorhabditis elegans Hypothetical ... 28 7.7
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 331 bits (813), Expect = 3e-91
Identities = 145/207 (70%), Positives = 175/207 (84%)
Frame = +2
Query: 98 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 277
MD +GRKVIV DNGTGFVKCG+AG+NFPA IFPSMVGRPI+R+ ++G+I++KDLMVG+E
Sbjct: 1 MDSQGRKVIVVDNGTGFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGNIEIKDLMVGEE 60
Query: 278 ASKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNR 457
S+LR ML+++YPM+NG+VRNW+DM HVWD+TFGP K+++DPKE K+LLTEPP+NP NR
Sbjct: 61 CSQLRQMLDINYPMDNGIVRNWDDMAHVWDHTFGPEKLDIDPKECKLLLTEPPLNPNSNR 120
Query: 458 EKMIEVMFEKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHICPVYEEFALPHLTR 637
EKM +VMFE+Y F+S YVA+QAVLTLYAQGL+ THICPVYE FAL HLTR
Sbjct: 121 EKMFQVMFEQYGFNSIYVAVQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFALHHLTR 180
Query: 638 RLDIXGRDITRYLIKLLLLRGYAFXHS 718
RLDI GRDIT+YLIKLLL RGY F HS
Sbjct: 181 RLDIAGRDITKYLIKLLLQRGYNFNHS 207
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 197 bits (480), Expect = 7e-51
Identities = 96/204 (47%), Positives = 130/204 (63%)
Frame = +2
Query: 98 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 277
M D +V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 58
Query: 278 ASKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNR 457
A R +L + YP+E+G+V NW+DM +W +TF +++ V P+E +LLTE P+NP NR
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANR 117
Query: 458 EKMIEVMFEKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHICPVYEEFALPHLTR 637
EKM ++MFE + + YVAIQAVL+LYA G TH P+YE +ALPH
Sbjct: 118 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIL 177
Query: 638 RLDIXGRDITRYLIKLLLLRGYAF 709
RLD+ GRD+T YL+K+L RGY+F
Sbjct: 178 RLDLAGRDLTDYLMKILTERGYSF 201
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 196 bits (479), Expect = 1e-50
Identities = 96/204 (47%), Positives = 130/204 (63%)
Frame = +2
Query: 98 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 277
M D +V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 58
Query: 278 ASKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNR 457
A R +L + YP+E+G+V NW+DM +W +TF +++ V P+E +LLTE P+NP NR
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANR 117
Query: 458 EKMIEVMFEKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHICPVYEEFALPHLTR 637
EKM ++MFE + + YVAIQAVL+LYA G TH P+YE +ALPH
Sbjct: 118 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAIL 177
Query: 638 RLDIXGRDITRYLIKLLLLRGYAF 709
RLD+ GRD+T YL+K+L RGY+F
Sbjct: 178 RLDLAGRDLTDYLMKILTERGYSF 201
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 196 bits (479), Expect = 1e-50
Identities = 96/204 (47%), Positives = 130/204 (63%)
Frame = +2
Query: 98 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 277
M D +V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 58
Query: 278 ASKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNR 457
A R +L + YP+E+G+V NW+DM +W +TF +++ V P+E +LLTE P+NP NR
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANR 117
Query: 458 EKMIEVMFEKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHICPVYEEFALPHLTR 637
EKM ++MFE + + YVAIQAVL+LYA G TH P+YE +ALPH
Sbjct: 118 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAIL 177
Query: 638 RLDIXGRDITRYLIKLLLLRGYAF 709
RLD+ GRD+T YL+K+L RGY+F
Sbjct: 178 RLDLAGRDLTDYLMKILTERGYSF 201
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 196 bits (479), Expect = 1e-50
Identities = 96/204 (47%), Positives = 130/204 (63%)
Frame = +2
Query: 98 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 277
M D +V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 58
Query: 278 ASKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNR 457
A R +L + YP+E+G+V NW+DM +W +TF +++ V P+E +LLTE P+NP NR
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANR 117
Query: 458 EKMIEVMFEKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHICPVYEEFALPHLTR 637
EKM ++MFE + + YVAIQAVL+LYA G TH P+YE +ALPH
Sbjct: 118 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAIL 177
Query: 638 RLDIXGRDITRYLIKLLLLRGYAF 709
RLD+ GRD+T YL+K+L RGY+F
Sbjct: 178 RLDLAGRDLTDYLMKILTERGYSF 201
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 196 bits (479), Expect = 1e-50
Identities = 96/204 (47%), Positives = 130/204 (63%)
Frame = +2
Query: 98 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 277
M D +V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 58
Query: 278 ASKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNR 457
A R +L + YP+E+G+V NW+DM +W +TF +++ V P+E +LLTE P+NP NR
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANR 117
Query: 458 EKMIEVMFEKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHICPVYEEFALPHLTR 637
EKM ++MFE + + YVAIQAVL+LYA G TH P+YE +ALPH
Sbjct: 118 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAIL 177
Query: 638 RLDIXGRDITRYLIKLLLLRGYAF 709
RLD+ GRD+T YL+K+L RGY+F
Sbjct: 178 RLDLAGRDLTDYLMKILTERGYSF 201
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 196 bits (479), Expect = 1e-50
Identities = 95/204 (46%), Positives = 130/204 (63%)
Frame = +2
Query: 98 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 277
M D ++ DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MCDDDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 58
Query: 278 ASKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNR 457
A R +L + YP+E+G+V NW+DM +W +TF +++ V P+E +LLTE P+NP NR
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANR 117
Query: 458 EKMIEVMFEKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHICPVYEEFALPHLTR 637
EKM ++MFE + + YVAIQAVL+LYA G TH P+YE +ALPH
Sbjct: 118 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIL 177
Query: 638 RLDIXGRDITRYLIKLLLLRGYAF 709
RLD+ GRD+T YL+K+L RGY+F
Sbjct: 178 RLDLAGRDLTDYLMKILTERGYSF 201
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 196 bits (479), Expect = 1e-50
Identities = 96/204 (47%), Positives = 130/204 (63%)
Frame = +2
Query: 98 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 277
M D +V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 58
Query: 278 ASKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNR 457
A R +L + YP+E+G+V NW+DM +W +TF +++ V P+E +LLTE P+NP NR
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANR 117
Query: 458 EKMIEVMFEKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHICPVYEEFALPHLTR 637
EKM ++MFE + + YVAIQAVL+LYA G TH P+YE +ALPH
Sbjct: 118 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAIL 177
Query: 638 RLDIXGRDITRYLIKLLLLRGYAF 709
RLD+ GRD+T YL+K+L RGY+F
Sbjct: 178 RLDLAGRDLTDYLMKILTERGYSF 201
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 196 bits (479), Expect = 1e-50
Identities = 96/204 (47%), Positives = 130/204 (63%)
Frame = +2
Query: 98 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 277
M D +V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 58
Query: 278 ASKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNR 457
A R +L + YP+E+G+V NW+DM +W +TF +++ V P+E +LLTE P+NP NR
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANR 117
Query: 458 EKMIEVMFEKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHICPVYEEFALPHLTR 637
EKM ++MFE + + YVAIQAVL+LYA G TH P+YE +ALPH
Sbjct: 118 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAIL 177
Query: 638 RLDIXGRDITRYLIKLLLLRGYAF 709
RLD+ GRD+T YL+K+L RGY+F
Sbjct: 178 RLDLAGRDLTDYLMKILTERGYSF 201
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 194 bits (472), Expect = 7e-50
Identities = 91/196 (46%), Positives = 127/196 (64%)
Frame = +2
Query: 122 IVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDEASKLRSML 301
+V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDEA R +L
Sbjct: 8 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGIL 65
Query: 302 EVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNREKMIEVMF 481
+ YP+E+G+V NW+DM +W +TF +++ + P+E +LLTE P+NP NREKM ++MF
Sbjct: 66 TLKYPIEHGIVTNWDDMEKIWHHTFY-NELRIAPEEHPVLLTEAPLNPKSNREKMTQIMF 124
Query: 482 EKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHICPVYEEFALPHLTRRLDIXGRD 661
E + + YV IQAVL+LYA G TH P+YE +ALPH +RLD+ GRD
Sbjct: 125 ETFNTPAMYVNIQAVLSLYASGRTTGIVLDTGDGVTHTVPIYEGYALPHAIQRLDLAGRD 184
Query: 662 ITRYLIKLLLLRGYAF 709
+T Y++K+L RGY F
Sbjct: 185 LTDYMMKILTERGYTF 200
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 183 bits (446), Expect = 1e-46
Identities = 88/186 (47%), Positives = 121/186 (65%)
Frame = +2
Query: 152 KCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDEASKLRSMLEVSYPMENGV 331
+ GFAG + P +FPS+VGRP R + + + KD VGDEA R +L + YP+E+G+
Sbjct: 5 RAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI 62
Query: 332 VRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNREKMIEVMFEKYEFDSAYV 511
V NW+DM +W +TF +++ V P+E +LLTE P+NP NREKM ++MFE + + YV
Sbjct: 63 VTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYV 121
Query: 512 AIQAVLTLYAQGLIXXXXXXXXXXXTHICPVYEEFALPHLTRRLDIXGRDITRYLIKLLL 691
AIQAVL+LYA G TH P+YE +ALPH RLD+ GRD+T YL+K+L
Sbjct: 122 AIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILT 181
Query: 692 LRGYAF 709
RGY+F
Sbjct: 182 ERGYSF 187
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 173 bits (421), Expect = 1e-43
Identities = 80/199 (40%), Positives = 115/199 (57%)
Frame = +2
Query: 122 IVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDEASKLRSML 301
+V DNG+G +K GFAG P F + VGRP G +D D+ +G +A R +
Sbjct: 11 VVIDNGSGVIKAGFAGEQQPKVRFANFVGRPKYHRV-MAGGLD-GDIFIGPKAESNRGLF 68
Query: 302 EVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNREKMIEVMF 481
+ YPME+G+V NW DM +W+Y FG ++ + P+E +LLT+ P+NP KNRE+ E+ F
Sbjct: 69 SIEYPMEHGIVNNWSDMEKIWEYIFGQDQLKIFPEEHPVLLTDAPLNPLKNRERSAEIFF 128
Query: 482 EKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHICPVYEEFALPHLTRRLDIXGRD 661
E + + Y+ +QAVL+LYA G TH P+ + FA+ H +R+D+ GRD
Sbjct: 129 ETFNVPALYIQMQAVLSLYATGRTTGVVLDSGDGVTHAVPIVKGFAMKHAIQRMDLAGRD 188
Query: 662 ITRYLIKLLLLRGYAFXHS 718
+T YL LL GY F S
Sbjct: 189 VTEYLRVLLRREGYEFHRS 207
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 161 bits (391), Expect = 5e-40
Identities = 75/152 (49%), Positives = 101/152 (66%)
Frame = +2
Query: 254 KDLMVGDEASKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEP 433
KD VGDEA R +L + YP+E+G+V NW+DM +W +TF +++ V P+E +LLTE
Sbjct: 7 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEA 65
Query: 434 PMNPTKNREKMIEVMFEKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHICPVYEE 613
P+NP NREKM ++MFE + + YVAIQAVL+LYA G TH P+YE
Sbjct: 66 PLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEG 125
Query: 614 FALPHLTRRLDIXGRDITRYLIKLLLLRGYAF 709
+ALPH RLD+ GRD+T YL+K+L RGY+F
Sbjct: 126 YALPHAILRLDLAGRDLTDYLMKILTERGYSF 157
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 113 bits (271), Expect = 2e-25
Identities = 69/207 (33%), Positives = 103/207 (49%), Gaps = 19/207 (9%)
Frame = +2
Query: 125 VCDNGTGFVKCGFAGSNFPAFIFPSMVG---------RPIIRAENKIG-DIDVKDLMVGD 274
V DNGTG+ K G+AG+ P FI PS + +R N++G ID D +GD
Sbjct: 10 VIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNSQAMRWNNRVGAGIDDLDFFIGD 69
Query: 275 EA-SKLRSMLEVSYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTK 451
EA S + V YP+ +G+V +W+ M W+ + +P++ LLTEPP+N +
Sbjct: 70 EALSPAATNYTVKYPIRHGIVEDWDLMERYWEQCIF-KYLRAEPEDHFFLLTEPPLNTPE 128
Query: 452 NREKMIEVMFEKYEFDSAYVAIQAVLTLYA--------QGLIXXXXXXXXXXXTHICPVY 607
NRE E+MFE + Y+A+QAVL L A + + TH PV
Sbjct: 129 NREYTAEIMFESFNVPGLYIAVQAVLALTASWNSREANERSLTGLVIDSGDGVTHCIPVA 188
Query: 608 EEFALPHLTRRLDIXGRDITRYLIKLL 688
+ + + + + I GRDIT ++ LL
Sbjct: 189 DGYVIGSCIKHIPIAGRDITYFIQSLL 215
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 81.8 bits (193), Expect = 4e-16
Identities = 39/85 (45%), Positives = 53/85 (62%)
Frame = +2
Query: 98 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 277
M D +V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 58
Query: 278 ASKLRSMLEVSYPMENGVVRNWEDM 352
A R +L + YP+E+G+V NW+DM
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDM 83
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 81.8 bits (193), Expect = 4e-16
Identities = 39/85 (45%), Positives = 53/85 (62%)
Frame = +2
Query: 98 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 277
M D +V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 58
Query: 278 ASKLRSMLEVSYPMENGVVRNWEDM 352
A R +L + YP+E+G+V NW+DM
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDM 83
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 81.4 bits (192), Expect = 6e-16
Identities = 39/85 (45%), Positives = 53/85 (62%)
Frame = +2
Query: 98 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 277
M D +V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 58
Query: 278 ASKLRSMLEVSYPMENGVVRNWEDM 352
A R +L + YP+E+G+V NW+DM
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDM 83
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 81.4 bits (192), Expect = 6e-16
Identities = 39/85 (45%), Positives = 53/85 (62%)
Frame = +2
Query: 98 MDDKGRKVIVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDE 277
M D +V DNG+G K GFAG + P +FPS+VGRP R + + + KD VGDE
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDE 58
Query: 278 ASKLRSMLEVSYPMENGVVRNWEDM 352
A R +L + YP+E+G+V NW+DM
Sbjct: 59 AQSKRGILTLKYPIEHGIVTNWDDM 83
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 67.7 bits (158), Expect = 8e-12
Identities = 50/207 (24%), Positives = 97/207 (46%), Gaps = 18/207 (8%)
Frame = +2
Query: 122 IVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDEASKLRSML 301
+V D G+ + GFAG +P PS + ++ I+ ++ M + SK+++
Sbjct: 14 LVFDAGSQSFRVGFAGEEYPKGDIPSYIA---VQEALPDDTIEKQEAMEEGDNSKVQTKR 70
Query: 302 EVSY---------P---------MENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLT 427
E ++ P M+ G++ +WE + ++++ + + +P E +L +
Sbjct: 71 EKNFFIGTTKIIVPRARTNMESFMKEGLIEDWELFEKIVEHSY-ENILYSNPSEHPVLFS 129
Query: 428 EPPMNPTKNREKMIEVMFEKYEFDSAYVAIQAVLTLYAQGLIXXXXXXXXXXXTHICPVY 607
E N REK+ E+MFEK++ + Y++ VL+ +AQG T + PV+
Sbjct: 130 ESSWNDRARREKLTEIMFEKFQVPAYYLSKNVVLSCFAQGRTHGLMVDSGATQTSVVPVF 189
Query: 608 EEFALPHLTRRLDIXGRDITRYLIKLL 688
+ +A+ H + I G IT L ++L
Sbjct: 190 DGYAVTHAVVKCPIGGDLITEQLAQML 216
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 42.3 bits (95), Expect = 3e-04
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 2/131 (1%)
Frame = +2
Query: 122 IVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDEASKLRSML 301
I+ DNG +K G S P +V I++A++ + K + V E +
Sbjct: 6 IIFDNGGHNMKIGTIDSESPR-----LVPNSIVKAKH-----EKKRVFVAHEQEECSDKF 55
Query: 302 EVSY--PMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNREKMIEV 475
+ Y P+E G V NW+ +W+ TFG M+V+ ++I LT+ + E+
Sbjct: 56 SLFYVRPIERGYVVNWDTQQQIWEKTFG--SMDVEASTSRIALTDNNYLIPALPDVSSEI 113
Query: 476 MFEKYEFDSAY 508
+F+ + F +
Sbjct: 114 LFDYFGFTEVH 124
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 42.3 bits (95), Expect = 3e-04
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 2/131 (1%)
Frame = +2
Query: 122 IVCDNGTGFVKCGFAGSNFPAFIFPSMVGRPIIRAENKIGDIDVKDLMVGDEASKLRSML 301
I+ DNG +K G S P +V I++A++ + K + V E +
Sbjct: 6 IIFDNGGHNMKIGTIDSESPR-----LVPNSIVKAKH-----EKKRVFVAHEQEECSDKF 55
Query: 302 EVSY--PMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNREKMIEV 475
+ Y P+E G V NW+ +W+ TFG M+V+ ++I LT+ + E+
Sbjct: 56 SLFYVRPIERGYVVNWDTQQQIWEKTFG--SMDVEASTSRIALTDNNYLIPALPDVSSEI 113
Query: 476 MFEKYEFDSAY 508
+F+ + F +
Sbjct: 114 LFDYFGFTEVH 124
>U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical
protein F42C5.9 protein.
Length = 552
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +2
Query: 386 KMNVDPKETKILLTEPPMNPTKNREKMIEVMFEKYEFDSAYVAIQAVLTLYA 541
++ V+P + K+LL+ P PT +++++ E +F SA + Q L LYA
Sbjct: 266 ELKVEPWKYKVLLSIPQNIPTVLIGELLQICLEDIKFQSAGITRQPSLILYA 317
>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical
protein C27B7.4 protein.
Length = 1274
Score = 31.1 bits (67), Expect = 0.82
Identities = 19/72 (26%), Positives = 30/72 (41%)
Frame = -1
Query: 442 IHWGFGEQNLRLFRIDVHLARTECVVPHVAHVLPITYDPILHRVANFKHGSQFGCFITHH 263
++ G E++ +F I HL T + PH + YD + + +K FGC + H
Sbjct: 235 VNAGHPEEDPDIFVIS-HL--THVLQPHQLGGIRFMYDNTIESLGEYKKSDGFGCILAHS 291
Query: 262 QVLNINISYFVF 227
L I F
Sbjct: 292 MGLGKTIQVITF 303
>AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical
protein C48E7.6 protein.
Length = 1764
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -2
Query: 300 SMDRSLDASSPTIKSLTSISPILFSARMIGLPTMEGNINAGKLLPAKPHFTKPVPLS-QT 124
S D ++S +++L S+ P++ A P INA LL + P F PL
Sbjct: 1473 SRDVLRNSSELRVRALVSVQPVIVEADT-ATPLTTSQINASTLLNSSPRFFLTSPLKFGR 1531
Query: 123 ITFRP 109
+TF P
Sbjct: 1532 LTFDP 1536
>Z46996-9|CAA87097.2| 400|Caenorhabditis elegans Hypothetical
protein C34C12.6 protein.
Length = 400
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = -1
Query: 601 GTNVRHTVTRVHDHSRYQSLS---VQREHSLYRDVSAVELILFKHHLDHFLSILSWIHWG 431
G +VR +T + YQ + R S ++DVS E +FK + + +L W
Sbjct: 277 GVSVRRKITSADYYKPYQHYKEHGIDRPKSSHKDVSPAEKFVFKIQVPNGKKLL-WDFTA 335
Query: 430 FGEQNLRLFR 401
GE +FR
Sbjct: 336 SGELQFAIFR 345
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 29.5 bits (63), Expect = 2.5
Identities = 25/77 (32%), Positives = 36/77 (46%)
Frame = -2
Query: 624 GSANSSYTGQMCVTPSPESTTTPDISP*AYNVSTACIAT*ALSNSYFSNITSIIFSRFLV 445
GS S+ TG+ V+ S EST T + + +VST T + S ++ S
Sbjct: 1084 GSTGSTITGESTVSGSTESTVTAESTVSGSSVSTVSGNTGSTITGE-STVSGSTGSTGES 1142
Query: 444 GFIGGSVSKIFVSFGST 394
+ SVS + VS GST
Sbjct: 1143 TILESSVSTVSVSTGST 1159
>AL117204-3|CAB55147.2| 675|Caenorhabditis elegans Hypothetical
protein Y116A8C.5 protein.
Length = 675
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/62 (22%), Positives = 27/62 (43%)
Frame = +2
Query: 308 SYPMENGVVRNWEDMCHVWDYTFGPSKMNVDPKETKILLTEPPMNPTKNREKMIEVMFEK 487
S+P + + H +TF P M++ T++ LT + R K +E + +
Sbjct: 493 SFPDYANIAFTSNTLAHEMGHTFSPHLMDIMTGTTEVWLTPKETEEYEKRVKCLEDQYTE 552
Query: 488 YE 493
Y+
Sbjct: 553 YD 554
>Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical
protein C14C10.5 protein.
Length = 1908
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = -2
Query: 414 FVSFGSTFILLGPNV*SHTWHMSSQLRTTPFSIG*LTSSMDRSLDASSPTIKSLTS--IS 241
++S S I + P + WH+ L + T++ +++L+ + LTS I+
Sbjct: 725 WISIASRMIKVHPKLLLDNWHLVETLMDLVMPLKKCTTATEKALNVLDNVLDQLTSIQIN 784
Query: 240 PILFSARMIGLPT 202
++ +M LPT
Sbjct: 785 SLVERRKMYDLPT 797
>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
protein C08G9.2 protein.
Length = 2224
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Frame = +3
Query: 600 PCMKSSRCLISPGGWTXPGGISRGISSNCF----CSEGMLSII 716
PC+ RCL++P P + GI++ C C EG S I
Sbjct: 373 PCLPVPRCLLNPCRHGPPSRLGNGITALCSIDKDCPEGTCSKI 415
>Z70783-10|CAC70122.1| 1037|Caenorhabditis elegans Hypothetical
protein ZK856.13 protein.
Length = 1037
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -1
Query: 592 VRHTVTRVHDHS-RYQSLSVQREHSLYRDVSAVELILFKHHLDHFLSILSWIHWG 431
+R + + H H+ YQ ++ E L A++ L HLD W+HWG
Sbjct: 275 LREVIKQDHKHAIAYQQIATVYEQ-LGDHQKALQFGLLASHLDPKTPPDDWVHWG 328
>AF003385-1|AAB54243.1| 884|Caenorhabditis elegans Hypothetical
protein R08F11.1 protein.
Length = 884
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = -1
Query: 688 KQFDEIPRDIPPGYVQPPGEMRQRELFIHGTNVRHTVTRVHDHSRYQSLSVQREHSLYRD 509
K D IP D+ G+ G ++++ L + + +HD R++ L+++ S YRD
Sbjct: 544 KSVDRIPHDM--GH-PTKGCIQEKRLSVADPWIHTNAYILHDTGRWKDLNLKFVISCYRD 600
Query: 508 VSAVEL 491
+EL
Sbjct: 601 WKLIEL 606
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,386,697
Number of Sequences: 27780
Number of extensions: 390161
Number of successful extensions: 1205
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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